RNA id: XM_034309965.1


Basic Information

Item Value
RNA id XM_034309965.1
length 3023
RNA type mRNA
GC content 0.45
exon number 4
gene id aoc2
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2225611 ~ 2233295 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCTTCGCTTCCTCAGAGGCATGGTTTCTCAAGTGACCAACTCCCTTGTCAAGTGCCTGCTGATTCTCCTCAGCCTCATCTCAGTGATACTGAATATCGTTTTGATATGCCTGAATTCAAACAGGCTTCCAAAATGCCAGATGCAATCACAAGGAACGGTGGCGGCCAACCACACGGACCACAGCCTGATATTCGCCGACCTCACCCCCAAGGAGTACCAGATGGTCCGTGATTACATGTGGAATCTGAAGGACTTGAAGATTTCTCGCTCCGCCATTGCAAAAGCATCAGAGAACTACATCTTTTTGATTGACCTTGTGCTTCCGAAAAAAGCAGAAGCGCTGAGATACCTGGATTCTCAGGGACTCAAACCCGAGCGCCAAGCCAGCgttgtggtgttttttggaGAGTTTAACTACCTCAAAGAGTACGTCGTGGGACCTCTGTCTGGTCCCATCCACCATCGGGATGTCACAAAGGAGAAGTACAACGTGGAGAGCCTACCTTTCACAGCCCGGCCTGTGACCATTGGGGAATACGTGCAGCTTTTCACATTAGTGTATGATGATGTCTTCAACCAGCTGAAGACAGAACTGAAGGAGAGCTTTGGTTATGACCCAAAAAAACCGAACCTGAACGTTTTCGAAGGGATGCCCAGAGGAGTACAATCAGGTGATCGAAAGACATGGGTATCATTTTTTCGTGATTTCAGTGGCATGTATATCCATCCAGTTGGCTTTGAAATTTTAGTCTgtcatgaaagtaaaaactccTCGGACTGGACCATTGAAAAGCTCTTGTACAACGGCATCTACTTTGACAGCAttgagagttttaaaaaaagctatGCAGCAGGTTCTTTTGAAAAGATTGTCTTTAAAGAAATCTCTAATTACGCCTCGCTGAAACCAAGAAGCGAACCTACGGGACTGGGACCACATCAGTATTACCTCCAAGGCAAGCGCTTCAGCGTGAAGCACAACCAGGTCATTTACCAGGACTGGAGGTTTGCATTCGGCCTGAGCTCACTGACCGGCATGCGAGTGTTCGACGTTCGCTTCAAAGGAGAAAGGATCATCTACGAGCTCAGCGTCCAGGAGGCCATGTCCGTGTACGGCTCCATAACTCCAGGGATGATGCTCACCAAATTTCTGGACACAAGCATCGGCATTGGCCGATTCGCCCACGAACTGGTGCGAGGCGTTGATTGTCCGTATTCAGCCACTTACATAGATGTTTACCGCTACATCGACATCAACACCACACAGCTTTTCCGCAATGCCATCTGTGTCTTCGAGCACGACGTGGGACGGCCACTACGCCGTCACTTTTCGGATTTCTTCCAGAACAGCTATGGAGGCCTGACCAACAGCGCCCTGTATATCCGCTCCATCACAGCCATTGGCAACTATGACTACATCTGGGACTTCATCTTCTACCAGAGCGGCACGGTGGAGGCCAGAGTTCACGCAACGGGTTATATATCATCCTCTTATAAAGTGCCCGGTAGTCTCAAGTACGGCCACCAGGTTGCTGAAAACGTGCTCGGAAACATCCACACGCACTTCGTTAACTTCAAGGTGGATCTGGATGTTTTAGGAGTGAGGAACGTGTTCCAGACCAAAGACATGGAGTATGAGGAGGTGTCTTTGCCCTGGATGACCGAACGCAAGGCCAAAATCCCCAAACTGGTGGAGAATCAGCTCAGGACCGAGCAGGAGGCGGCGCTTCGATACGGCACTAAGATTCCCCGTTACCTCCACGTGGCCAGCAATCAGAAGAACCGGTGGGGCCACCAGCGCACGTACAAGCTGCAGGTGATTAGTTTGGCTGGAGATCACCTCCCAGAGAGCGAGCCGGAGGAGAGGAGCATGTCCTGGGCACGGTACAAAGTTGCCATAACGAAGCATAAAGACACAGAACAGACCTGCAGCAGTCTGTACAGTCAGAATAACATGTGGAACCCAGTAGTCGACTTCAGCAACTACATCAAGGATAATGAGAGCATTGAGAATGAGGATCTGGTTGCCTGGGTAACGGTGGGTTTCCTCCACATCCCTAACGCCGAGGACATCCCCAACACGGTGACGGTGGGAAATGGAGGTGCTGTCCTCATCCGCCCGCATAATTACTTTGATgaagatccatccatccattcggCCGATGGAGTCTACTTCAAGCCAGGATCAGAAAGAGACTGTGAGTACAACAAGATGGCGTGTTTAGACAAACACCTGTGTAGCCCGACACTGGAGCCGTTCACGTACCACGGATTCGAGGGCGTCATGAATTTTAACgaataaatatatcattttatagATGTCCGCTGTTCCTGATTCATTCCTCTCCTCACCACTATAGTCACATTTTCACTCTTAGCATTGTCTTATGATTGTAGCACATGTTtatcttctttatttttgtgataGCAAGATGAATGTCTATAGAACTTTTTTggacaaatttatttttactcacttTTTAATTACCATCAAATGAGATTCAAAAAAACTGCATTCACTCAGAACTTCTACAGATTTGGTGTGaacttgtgtgtatttttgttttttcctcttttctcttttgaggtcttttcaaaatgaatgaatttatatacttttttttacacattttggtTTGGACAAGGTCTTTTACCTAACAAGAAAGTAATGACAAGAAacgagttactgctaccactctgaagttgattaatttcctataacagcatgtcccaaaattcctcttaaaccacagcaacttgattaaacactgaaaaattttactaattaaagaacaacacatcatacttttaatccatttatggttacctttaatgttgtggcatgtccatgaaacaaggtagttcctgttctcatttacgttatagcagctatgctCATTGCTTTTCTCTGtatcttgatgttaataagatttaaaaaacaaaaaaaaacaaaaaatgcagcttgtcatgttactgagaaactgcaaatcGTAAACTCctgaaaatgtctgaaaacttaaga

Function

GO: NA

KEGG:

id description
K00276 AOC3, AOC2, tynA; primary-amine oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241846 lncRNA downstream 11013 2213117 ~ 2214598 (-) True G204191
TU241841 lncRNA downstream 13168 2210785 ~ 2212443 (-) True G204187
TU241893 lncRNA downstream 19490 2205778 ~ 2206121 (-) True G204234
TU241832 lncRNA downstream 30071 2187273 ~ 2195540 (-) False ifi35
TU241831 lncRNA downstream 35907 2187273 ~ 2189704 (-) False ifi35
TU241924 lncRNA upstream 25209 2258504 ~ 2260374 (-) True G204264
TU241929 lncRNA upstream 31548 2264843 ~ 2265213 (-) True G204269
TU241937 lncRNA upstream 91591 2324886 ~ 2379453 (-) True G204275
TU241938 lncRNA upstream 98381 2331676 ~ 2342773 (-) False LOC113528223
XR_004579375.1 lncRNA upstream 181024 2414319 ~ 2415310 (-) False LOC117598835
XM_026917082.2 mRNA downstream 101775 2114102 ~ 2123836 (-) True ifi35
XM_026917008.2 mRNA downstream 148134 2066177 ~ 2077477 (-) True LOC113528455
XM_034310295.1 mRNA downstream 212360 1991173 ~ 2013251 (-) False LOC113527889
XM_034310005.1 mRNA upstream 36376 2269671 ~ 2283303 (-) True LOC113528224
XM_034310165.1 mRNA upstream 56122 2289417 ~ 2304449 (-) True LOC117598982
XM_026916342.2 mRNA upstream 71981 2305276 ~ 2323646 (-) True LOC113528064
XM_034310168.1 mRNA upstream 105582 2338877 ~ 2344912 (-) True LOC113528223
XM_034310169.1 mRNA upstream 129829 2363124 ~ 2375676 (-) True LOC113528065
XR_004579451.1 other downstream 217823 2003534 ~ 2007788 (-) False LOC113527889
XR_004579450.1 other downstream 217824 2003534 ~ 2007787 (-) False LOC113527889
XR_003402974.1 other downstream 726006 1499515 ~ 1499605 (-) True LOC113528659
XR_003402975.1 other downstream 726261 1499261 ~ 1499350 (-) True LOC113528660
TU241260 other downstream 880440 1265662 ~ 1345171 (-) False G203695
XR_004579338.1 other upstream 366414 2599709 ~ 2600352 (-) True LOC117598767
XR_003402970.1 other upstream 922001 3155296 ~ 3155430 (-) True LOC113528655
XR_003402972.1 other upstream 923322 3156617 ~ 3156709 (-) True LOC113528657
XR_004579380.1 other upstream 1149536 3382831 ~ 3413767 (-) False nde1
XR_004579378.1 other upstream 1166450 3399745 ~ 3413767 (-) False nde1

Expression Profile