RNA id: XM_034310004.1


Basic Information

Item Value
RNA id XM_034310004.1
length 1753
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC113528063
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2392163 ~ 2400882 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTGGCTGATGACGCTAACATACGACTTGCTGGTGGCAGTAACTACTGTTCTGGCAGAGTGGAATTGAAATATAATAACCaatggggaacagtgtgtgatgacagTTGGGACATGAATGATGCGCAGGTGGTGTGTAGACAGCTTAGATGTGGTAATGCTGTCAGTGCACCTCAAAGTGCCTACTTTGGTCAGGGAAGTGGCCCAATATGGCTGGATGATGTTCAGTGTTCTGGAAGTGAAAGCGCCATCACACAGTGCTCTCATTATGGATTTGGAAACCACAACTGTGGCCATGGTGAAGATGCTGGTGTTACTTGCTCAGCGCGTAACCCGATCAGGCTGGTGAATGGTTCAATCTGTTGTGGTCGAGTGGAGATCCAGCACAATGGCCgttggggaacagtgtgtgatgatgattgGGACTTAAAGGATGCAGAGGTGGTGTGTAGACAGCTTGGATGTGGTAAAGCCATCAGCGCTCCTAGTAATGCCCGCTTTGGTCAGGGAAGTGAACCAACCTGGCTGGATGATGTTCGGTGTACTGGAACTGAGAGCTCCATAGATCACTGCTCACACAGCGGATTTGGAGTAGAGGACTGTAAACATTATGAAGATGCTGGAGTCGTGTGCTTAAACCTGCAGACTCCCACATTGACTCGGATCTCTCCAAACTCTGTGGTCTCACCTGGAGAACTCCTTCAGTTCAGATGTACCACACCCAGCCCAACATGCATCTCTGTGGACTTCACTTTGTATAAAGATGGGACTTCAATAAAGAAGCAAACTGCAGTGTCAACAACAACATTTAATCTGACTGTAGATGCGTCACATCAGGGCCAGTACACCTGTGACTACTCATACAGGGAAAGTAACTCCATATCATCCAGGAGCACCTCCTTTAACATCACTGTGGTAAACCTGCAGCAGCCTAATATCTCCTTCAGTGCTGTTGGTGGACCAGAAGTGACAAGGGGCTATGGCTTCTCCATCATCTGCTCAACTGAACCTCAGTATCCAGACGGTTCCTTCCACTTGAAGTTCAGTGGATCCAACATCACCAGAACTCAGTCAGCTGTTAATCACTCAGCCGTCTTCCTGTTTCCTGAGGCGGATTTTGTCCTTCAGGGAAACTACAGCTGTACTTATGAAGTTAACGTGTCCTCACGCACCTTTACCTCTACTACCACTCAGCTCCTGTTCATCACTGAGAAAGCATCTCTGGCTCCCTACATTGGTGTTGGATTGACAGCAGGACTGCTTCTCATCGCAGTCATCATTTGCTTTGTGAAGACACAAAAAAGACGAAAATGTCAGATGGATAAGAAGAAGGATACACAGTGTGCCAGAAACACATATGACAGTCCCCAAGGAGAGATTGAGACAGATGATGAAGACGTTtatgaaaacacagaaactatTTTCCCCCAGAAGGACGATTCAGACAACTCTGAAAACGACCAAACTGATTTCAATGCTCATGAACAAAGAAGTGATGTGGACAATGACAATGAGGATGCAGAAATTTATGCAAACTGTGAAGAGTAGTGCTGAGAACTAAACAATTATCCAATATCTACAGTCCACAAATAATAACATGGTTAATTTGGATAATCTTCCATTGttaagatattattattttctagtTGTTTTAAATAACACAGATTTTAGAATCAGtttgttttcatctgtttagTCTGTTTAGATGTTACTATATcaaaacttttattttcattttcttactAGTTTATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241937 lncRNA downstream 12710 2324886 ~ 2379453 (-) True G204275
TU241938 lncRNA downstream 49390 2331676 ~ 2342773 (-) False LOC113528223
TU241929 lncRNA downstream 126950 2264843 ~ 2265213 (-) True G204269
TU241924 lncRNA downstream 131789 2258504 ~ 2260374 (-) True G204264
TU241846 lncRNA downstream 177565 2213117 ~ 2214598 (-) True G204191
XR_004579375.1 lncRNA upstream 13437 2414319 ~ 2415310 (-) False LOC117598835
TU241959 lncRNA upstream 13585 2414467 ~ 2415527 (-) True LOC117598835
TU241970 lncRNA upstream 32346 2433228 ~ 2434080 (-) False LOC113528062
XR_004579377.1 lncRNA upstream 95730 2496612 ~ 2502195 (-) True LOC117598837
TU241989 lncRNA upstream 140244 2541126 ~ 2541525 (-) True G204317
XM_034310169.1 mRNA downstream 16487 2363124 ~ 2375676 (-) True LOC113528065
XM_034310168.1 mRNA downstream 47251 2338877 ~ 2344912 (-) True LOC113528223
XM_026916342.2 mRNA downstream 68517 2305276 ~ 2323646 (-) True LOC113528064
XM_034310165.1 mRNA downstream 87714 2289417 ~ 2304449 (-) True LOC117598982
XM_034310005.1 mRNA downstream 108860 2269671 ~ 2283303 (-) True LOC113528224
XM_034309996.1 mRNA upstream 32267 2433149 ~ 2538111 (-) True LOC113528062
XM_034310001.1 mRNA upstream 32268 2433150 ~ 2538111 (-) False LOC113528062
XM_034310000.1 mRNA upstream 32268 2433150 ~ 2538111 (-) False LOC113528062
XM_034309998.1 mRNA upstream 32269 2433151 ~ 2538111 (-) False LOC113528062
XM_034309999.1 mRNA upstream 32269 2433151 ~ 2538111 (-) False LOC113528062
XR_004579451.1 other downstream 384375 2003534 ~ 2007788 (-) False LOC113527889
XR_004579450.1 other downstream 384376 2003534 ~ 2007787 (-) False LOC113527889
XR_003402974.1 other downstream 892558 1499515 ~ 1499605 (-) True LOC113528659
XR_003402975.1 other downstream 892813 1499261 ~ 1499350 (-) True LOC113528660
TU241260 other downstream 1046992 1265662 ~ 1345171 (-) False G203695
XR_004579338.1 other upstream 198827 2599709 ~ 2600352 (-) True LOC117598767
XR_003402970.1 other upstream 754414 3155296 ~ 3155430 (-) True LOC113528655
XR_003402972.1 other upstream 755735 3156617 ~ 3156709 (-) True LOC113528657
XR_004579380.1 other upstream 981949 3382831 ~ 3413767 (-) False nde1
XR_004579378.1 other upstream 998863 3399745 ~ 3413767 (-) False nde1

Expression Profile