RNA id: XM_034310007.1


Basic Information

Item Value
RNA id XM_034310007.1
length 5194
RNA type mRNA
GC content 0.52
exon number 31
gene id LOC113528556
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3317323 ~ 3352852 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agaaagcaggctATTAAACAGGCCGGCACACTAACCTGCACTCAGACTGCAGTctccagtgtgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgagagtgcgtgtatatgaaagaaaaagattttaaGCTGTGGGACCGGTCCTCAGCCCTCAGACGgagcagtgaagaaaaaaacctgCCTGAGTAGTGAATACTTACTGGACGAAGTGGAGAAGAGTGAGCAGGAAGGGAAGGAGTCTGGATGGACAAACTCTGCACTGACAGTGGCCTGGACCCACTCTGGGACTGGAACGTGACGTGGTACACATTAAACCCGGACCTGACGCAGTGTTTTCAGCACACGGTTCTTGTCTGGTTCCCCTGTTTCTATCTGTGGGTTTGCAGTCCATTTTACCTCCTCTACCTCCGATGCTTCCATCATGGCTTCATCTCGTTCTCCAGACTCTGCTGCGCCAAAACAattctGGGTGTGTGCTTGGTGTTATTCAGTATTTTGGAGCTGCTCTATCTGCTGTttgagaggagaacagagatcGAGCACCACATGGTTTTCCTCCTGAGCCCCATCATTCGCAGCCTCACCATGgtcttGGCAGTGTGTATTATCCACCTGGAGAGAATAATGGGCTGCcgttcctctctttttctttttctctattgGACGCTGACAGTGATCTGTTCAATCGTTCCTCTCAGAGCAAACATCCAGACCACGGTGGGAGAGgaTTTCTCACAAGGTGCGTTGCGATTGGTGGTGTTTTTCTCCTGCTTTTCTCTTGAGCTCACTCAGCTCATCCTCAGCTGTTTCGCTGATCAGCGACCACATGTTCTGAAACCAGGCCATGTGACGAACCCATGTCCAGTTGAAGATGCTTCTTTTCTCTCTAAAACGCTGTTCTGGTGGTTCAGTGGGCTGGTTGTGAGGGGCTATCGCTCACCTTTAACAGCTGAAGATCTCTGGCCTCTACGAGAAGAGGACACGTCTGAAAAAATCATCAGTGATCTGGAGAGAGAGTGGAACACACAGTGCGCTGAATTACAGCAGGAGCGGAGTGTAACTGCATCTCGAACCCTGAGCTGCAGGATCACGGAGCAGACGCAGCTCCTGCAGAAACTGCGTCAGGAGCAGAGCGCCGGTTTCCTCCTGCTGCGCACGCTGGCCAAAACGTTCGGCCCATACTTCCTGTCAGGAACCCTCTGCCTCCTCATCCACGACGCCTTCATGTTCTCCATCCCTCAGCTGCTCAGCCTGCTGCTGGACGTGGTGAGAGATAAGGACGCCCCCTTGTGGAAGGGTTATTTATTCGCCTTCTCCATGTTCCTGCTCTCGTGCCTGCAGTCGCTCTTTAATCATCAGTACATGTACAGCTGCTTCACGGTGGGCATGAGGGTCAAAACCGCCATCATGGGTCTCGTCTATAGGAAGtctctggtGATCAGCAGTGCTGTGCGCAGGACGTGTACAGTGGGAGAGATAGTGAACTTGGTGTCCACTGACACTCAGAAACTCATGGACTTTGTAGTGTACTTCAACGCTGTTTGGTTGGCGCCCATTGAAATTGGCCTGTGCCTTTTCTTCCTTTGGCAGCGTTTGGGCCCTTCGGCTTTAGCTGGTATCACCACGGTGATCTTTATCTTCCCTCTGAATGGCCTCATCGCCAAAATGCGCAGCAAACTGCAGGAGGTCCAGATGAAGCACATGGATGGACGTATAAAGCTGATGAACGAGATTCTGAATGGAATAAAGATCCTGAAGTTTTACGCCTGGGAGAAAGCATTCGAGGAGCGAGTGCTGAGTTTCAGGGAGAAGGAACTGAAGGCACTGAAGAAATCACAAATCCTTTATTCCATCTCCATCGCTTCCTTCAACTCCTCCACTTTCCTGattgcGTTCGCCATGTTTGGATTCTACGTGCTGATCGATGAGAAAAACGTTCTGGATGCTCAGAAGGTCTTTGTCTCTCTGGCACTCATCAATATCCTAAAGACGCCGCTGAGTCAACTGCCCTTTGCCATGAGCACCACCATGCAGGCCGTTGTCTCTCTCAAACGTCTCGGAAAGTTTCTGTGTCAGGACGAGCTGAATGCGGACGCTGTGTTCAGAGCTCCATACACCCCGGAGGGCGATAGCATTGTGATAGAGGACGGCTGTTTCAGCTGGAGCAGAGACGGAGCGCTGTGTTTAAAGAGagtGAGTGTGAAAGTGCCGCACGGTTCGTTGGTGGCAGTGGTGGGTCACGTCGGCAGCGGAAAATCCTCCCTTCTTTCTGCCGTACTGGgggagatggagaaaaagagtgGAAATGTCACAGtgaagGGTTCGGTGGCGTACGTGCCCCAGCAGGCGTGGATCCAGAACGCCACGCTGAGGGAGAACATCGTGTTCGGGCAGCAGATGAAGGAAAGCTGCTATCAGAGAGTGCTGGAGGCCTGCGCTCTCCTCCCAGACCTGGAGATCCTGCCTGGAGGAGACGACACCGAGATCGGAGAGAAGGGTTTGAATCTCTCCGGTGGGCAGAAACAGAGAGTGAGTTTAGCACGAGCTGTGTACAGAAATGCTGATGTTTACCTGCTGGACGACCCGCTGTCCGCCGTCGACACACACGTGGGTCAGCACATCTTCGACAAAGTCATCGGGCCTAAGGGGATACTCAAAAATAAGACGCGTGTGCTGGTGACCCACGGGCTCGGCTTCCTGCCTCAGGCTGACCTCATCCTGGTGATGGAAGATGGACAGATCATGGAGGCGGGCTCATATACAGAGCTGCTTGAGAGAAGGAACTCATTCGGTGACTTCCTTCAAATCTTCTCCAATACTGAACACAGGGAAAATTCCACTAACAGGGGTCCGAGGAAATCAGTGTCGCGTCTGAGCATGACGGATTTCTCTATAGACCTCTTACAGGAGCAGCTCATCAGTGGAGATATGAGCAGTGTCGGTATTCAGACCATGGAGGCTTTAACAGACTTAGAACAGGAGCAGGATACAGAGGAGCTGGGAAAATTAACAGAGGCTGATAAAGCCCATACTGGAaggGTGAAGCTGGAGATGTACATGGTGTATTTCAGGACCATCGGCCTGGCCTTCATCATCCCCATCATCTTCCTCTACGCCTTTCAGCAGGCCGCGTCACTCGGCTATAATTACTGGCTGCAGCTTTGGGCTGATGATCCCGTAATTAAAGGCTCTCAGAACAAAGCGGACGTAAAGCTGGCCGTGTTCGGGGCTCTCGGCTTCGCTCAGGGGATCGCCATCTTCGCCACCACCATAGCCATCTCGTTAGGAGGCATCATCGCTTCTCACCATCTTCACCTGGACCTTCTGCGTAACGTCCTGCGCTCGCCCATGTCGTTCTTCGAGAGCACGCTGAGTGGAAACCTGCTCAACCGCTTCTCCAAGGAGGTCGACGCCATCGACTGCATGATCCCCGACGCCTTTAAGATGATGCTGGGATACGTGTTCAAACTGCTGGAGGTCTGCATCATCGTGCTCATGGCCACGCCCTTCGCCAGAGTCGTCATTCTTCCTCTCGCTCTGTTCTACGTCTTCATCCAGAGCTTCTACGTGGCTACATCCTGCCAGCTGCGGCGTCTGGAGTCGGTGAGCCGCTCGCccatctacacacacttcaacgAGACGGTGCAGGGAGCGAGCGTGATCAGGGCGTTTGCGGAACAGCAGAGGTTTATCCTGCAGGCTAACAGCAGAGTGGATCACAACCAAACCTCTTACTTCCCCAGATTCGTCGCCACCAGATGGCTTGCTGTCAATCTAGAGTTTCTGGGGAACCTGTTGGTCCTCGCAGCTGCGATCCTGTCTGTGATGGGAAGAGAATCTCTGAGTCCTGGGATCGTCGGCTTGGCCGTGTCACACTCTCTTCAGGTGACGGGCATTCTGAGCTGGATCGTACGTGCATGGACAGATGTGGAAAACAACATTGTGTCTgtagagagagtgaaagagtatGCAGACACGCCAAAAGAGGCAGCTTGGTCGATGGAGAACATGTCCCTGCCCTCTCACTGGCCACAAACAGGCAGCATCCAGTTTCAGCAGTACGGACTGCAGTACAGAAAAGGTCTCGACTGGGCTTTAAAGGACATCACACTCAGCATccaggagagagaaaagATTGGGATCGTGGGGCGGACCGGGGCAGGAAAGTCATCTCTCGCACTCGGAATCTTCCGGATCATCGAGGCGGCAAAGGGAGAGATCTACATAGACGGAGTGAACATCGCTGAGATTGGACTGCATGACCTCCGATCTCGCATCACCATCATTCCGCAGGACCCGGTTCTGTTCTCCGGATCTCTGCGCATGAACCTGGACCCGTTCGATGGTTACTCTGATGAGGAGGTGTGGAAAGCTTTGGAACTCGCTCATCTCAAGAGCTTCGTGTCGGGCCTTCAGGAGAAACTGAACCACGAGTGTTCTGAGGGAGGAGAGAACCTCAGtctgGGTCAGAGGCAGCTGGTGTGTTTGGCTCGAGCTCTCCTCAGGAAGACGAAGATTTTGGTTCTGGATGAAGCCACAGCGGCCGTGGACATGGAGACGGACAAACTGATCCAGTCCACCATCCGCACACAGTTCGAGGAGTGTACAGTGCTGACCATCGCTCACCGCCTCAACACCATCATGGATTACacacgggtTCTAGTGATGGAGCGCGGTTCTATCATAGAAATGGACTCGCCCTCTAACCTGCTCTCACAGAGAGGCCTCTTCTACGAGATGTGCCAGGAGGCGGGGCTAGTGTgacttcttcatcatcatcatcatcatcagtgtagCTTGTGCAGAAACGAGCAGCGTGATCAGCTCCTGAAGGAAGAAGATCTGCAGGACAGAACCttctggaactttttttttttttacacttttatacatGCACATGATGAAGGTCTTCATGAACAGTGTTACTCAGAGAAGAACTGTTACTAatgtgttcatctctctctctctctctctccccctccctctcatCCACTCATCCCCTCACTCATTCTGTATATCTGTTCATCCTCTtcatccctcctcctcctcctcctcctcctctgaaGGAACAGGAAGTTAATCACATACAGAGTGATGTAAAACCTCTGCAAGTCAGTGCTGAGTGTTTTGTACtgtattatatttgtatttttatatatatttataggaaaatgttaaaatttata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242361 lncRNA upstream 98439 3215787 ~ 3218884 (+) True G204633
XR_003402893.2 lncRNA upstream 117268 3192704 ~ 3200055 (+) True LOC113527909
TU242118 lncRNA upstream 244597 3064905 ~ 3072726 (+) True G204417
TU242111 lncRNA upstream 281160 3034271 ~ 3036163 (+) True G204410
TU242013 lncRNA upstream 414428 2902229 ~ 2902895 (+) False LOC113528221
TU242421 lncRNA downstream 446 3353298 ~ 3356906 (+) True G204678
TU242422 lncRNA downstream 46917 3399769 ~ 3403347 (+) True G204679
TU242522 lncRNA downstream 181437 3534289 ~ 3587548 (+) False glyr1
TU242534 lncRNA downstream 217911 3570763 ~ 3573520 (+) False glyr1
TU242528 lncRNA downstream 235050 3587902 ~ 3590031 (+) True G204771
XM_034309687.1 mRNA upstream 19727 3290562 ~ 3297596 (+) True LOC117598751
XM_034310181.1 mRNA upstream 27882 3276048 ~ 3289441 (+) True LOC117598988
XM_026916969.2 mRNA upstream 75336 3236039 ~ 3241987 (+) True mylpfa
XM_026917271.2 mRNA upstream 86109 3223785 ~ 3231214 (+) False zgc:153733
XM_026917067.2 mRNA downstream 117601 3470453 ~ 3477325 (+) True mpv17l
XM_026916222.2 mRNA downstream 127386 3480238 ~ 3483748 (+) True si:dkeyp-72e1.6
XM_026917218.2 mRNA downstream 132892 3485744 ~ 3500428 (+) True rrn3
XM_026916263.2 mRNA downstream 188258 3541110 ~ 3560678 (+) True ppl
XM_034309979.1 mRNA downstream 210798 3563650 ~ 3587696 (+) True glyr1
TU242330 other upstream 117190 3192712 ~ 3200133 (+) False LOC113527909
TU242114 other upstream 304464 3003672 ~ 3012859 (+) False pyya
XR_004579364.1 other upstream 1161474 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 1431845 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 1726248 1561594 ~ 1591075 (+) False syt3
TU242670 other downstream 613906 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 613906 3966758 ~ 3986284 (+) False limd2
TU242672 other downstream 613906 3966758 ~ 3986284 (+) False limd2
TU242673 other downstream 613906 3966758 ~ 3986284 (+) False limd2
trnae-cuc_26 other downstream 618327 3971179 ~ 3971250 (+) True trnae-cuc_26

Expression Profile