RNA id: XR_004579379.1


Basic Information

Item Value
RNA id XR_004579379.1
length 4168
RNA type misc_RNA
GC content 0.43
exon number 10
gene id nde1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3382831 ~ 3413767 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCAAGCCATGGAGTTGTCGTGATATTTCTCGCGTATGAAGTGAAGCTCGCAGGATCACGCGGCAGTGTTTCAGTCGTCGCACGAGCGGACATCAGATTCTGGGAGAAGAATTGAATCGAAgcggtttttttttctctattgtGTAAAAGTGTCTGGATTTTTACTgtcttgtttttaaaattcttatcTCTAAAACAGTATTAAAACCTAAATCTGATCAGGAATATAAAACCAGAAGaggtttctgttttttgttcagGTTTGGGCGTCAAAGCAGAAGTCGGGAAAATTTGTAAAGTTTTGAAGAACCGTCTGATCGTCCTGGACAGAAATGAGTGACTCCGAACCTCCGATGTTTTCGTCCGTCGAAGAAGAGAGGGATTACTGGAAGGAGAGAGCGGCTCAGCACCAGCAGAGGGCTGATGAGGCTCGAGACGAGCTGCAGGAGTTCCAGCAGATGAGTCGAGATTACGAAGCCGAACTGGAGACCGAACTGAAGCAGTGTGAAGCGCGAAACCGAGACCTCCTCACGACCAACAACCGGCTACGAGCGGAACTGGAAGGATTCAAGgAGAAGTATGAGACGCAGCACTCGGAGACGTACAGACGGATTTCTGCCCTGGAGGGAGAGTTAGCCGAGACCACCGCCATCAAAGACCAGTTACAGAAGTACATCAGAGAGCTGGAGCAGGCCAACGATGACCTGGAGAGAGCCAAAAGggccACCATCATGTCTCTGGAGGACTTCGAGCAGAGGATGAACCACGTCATTGAGAGAAACGCTTTCCTGGAGAGCGAGCTGGACGAGAAGGAGAATCTGCTGGAGTCGGTGCAGAGACTGAAGGATGAAGCTCGAGatctgAGGCAGGAGCTGGCTGTGAAACAGAAGCAGGACCGTAAACCGTCCCTCAGCCTTTCAGTAGACGGAGAGAAGGTGGAGTCGACGCCGTCACACGCTCCGTCCGCTCATTCCTCACTCCTCACTACACCGCCCAGAGCAGCAGCGGGCCCCGGGAGCACGTTTCACACACCGCCGTCCTCCTACAGCAGGAttGAAGGTCTTACTGGGACGCCGTTGACGACGTCAGCACGGATTTCCGCTCTCAACATCGTAGGAGAGCTGCTGAGGAAAGTCGGCaatttGGAGTCGAAGCTGGCGTCGTGCAGAGAGCTGCAGGTCCAGGAGAGAACGCCGAGCCGCTCGGCGATGGCTCAGAGCTCGCACAACACGCCGAGAGAAGCACTAGAGAACCAGTCGAGCACTAACGGTCTGTTTGAGGGGATGGTGAAGCGCCTGGATTTTGGACCCAAAATGGTGGTGTGACTGacgcttttctctctctctctctctctctctctctctctctctctccatcgtgtgtgtgattgttctGGACTCTTCTATGCATGCCTCCGGCTGACTAAGGGTTTAACACTCTTGCATTTGGAGTGTGTGAGCTCGTCTCTGCTTTATTACTACTGTTAACTGAGGGTTAATCCctctctattttattttattattttttttatttttttttttaactttgtctATATTTACAGCCTGATATATACATATctatttttcactgtttttacattgaaaatgtctgaaatggaTATTAGCACTGCACAGTTTGGGTGGTTTTCTGCTCTACGATCTGTTTCACGACCTAATAGGGTGAAAATTGGTCAAAGATGGAAGTAAGAAATGAGATTATCAGTAGGAAATGTTATTCTAATGCCTcagatttaatacatttaagaaatataaataatttccccTTTAGCCTGAATGCAGTCTCTCACGTGAGACATGTCTGGTGTGTgtagtttgcttctttaattctgcactggagctacaaggcggAATTACCTGATAAGCAAGGGGAGATTATAGCCATATGTTTAACCTGGCTAAGTTGTAGCTTTTTAAGATGTTACGTTTTGGAAAGAAATTACAGCTAGGTTATAATTTTAATCAATATTTCCTTGTTCAAAGTCCTAACTGAGTCTGAGGCATATGGAGTGACTGAGGATGAAAATAATTTGGTTCTGAGGTGGCGCTCTGAGGTGGCGCTCTGAGGTGGCGCTCTAAGGTGGCGCTCTAAGATGGCGCTCTGAGGTGGCGCTCTAAGGTGGCGCTCTAAGATGGCGCTCTAAGATGGCGCTCTGAGATGGCGCTCTAAGATGGCGCTCTGTGACGTCGGTGTGTCCATTTTATCGAATCAGAGACAACGAACAACTCCGCACAAAGCTATACACTTCGTTTAGCTGTTACCTTGTAGGTGAACACATCTTCATGCAAATGAGAtgactcaggtgtgtgtgggtgagagagagagagagagagagcaggaaacactaaactgtgcagtgcagCTCAAACGTACGGACTGCAATATTGCCATATGGGTTTGTGTGCAAAATGTCTTCTAACGAACAATTAGAGGTTTGGTGCAAGGAGCTTTAGCTTTAGCAGGTTAGGAATAACGTTTCGAAATGTTGTTGCTTTGCGTCAGTGACACACCTGCCCTTTTTGGGGCACTCGTAGCCGAGCCACGTTCCTGTACGTTAGCGAACATGACGtcaagatattttaattttgtcacTGGATAACAAGTTGGAACAGACGCTTCATGTTATGAGTGGGAggttaagaaaaaaatttttagaaataaattgcttaaaatgtaacatgaggggaaagaaaaacacatttttgtcgTTACAGCAACAACGTCAGTGGTATAAAAGCACTAAGGAGACTCAGGATGCGCTCAAAATATAGAAATGGTAAAtgattgtataaatttatcacGTTGTCATATTGCACACATGTACAAAGCGTTGATGATTGTTAGGTTCTCACTTGCTTAACAGAGGATCAGGGTTCTGTTAGGGATGAACCATAGAACCCTTTACATGTTAGATTTAATCTTTTGCTCCTGAGCATGTACAGTAATGGCTTTTACGTGGCTGATGTGACACTAACTGTCTATTTTAAAGAGCTTTTGCTGATGTgaaatgttagtgtttgtgtctTTGCTGTGATTTCACGAACCTGTGCCTTAGGATTAGTTTCGAGTTGCGTTCTTCGGGGAAAATTGAGACGGAGAACAGATGCTGCATTATAGAGAGACACGAGTCGCTAGAAGAGAGAGCGTTTACAACAGAGGGTTAATCTGAGtctatataagaaataaaacacttgggtgcGCTGTTGTgctttaagtgttttattcctcttacaccacagcaatttaccaacaatgacgattttttttatttattaaagaatgatgtctcgtttaatgttgtgaaacgtcgACAAAACAAGATATTtcctctctcgaagttaataagacaaaaaaaaaaagactccttccataaatgttaaagaaaactCCCCCGTTTCAACGATTGCTTACgatttttaatcagttcatgTGCAGCACCAAAGTCTGTTGTCTGTTGCACAAGTttctgtgtatgagctgttactatagaaacgatagagTATTAGAAcgagagatgctgttatagaaaatcattcaccttctgaccaatcagagttcaGTAGCTCTGTAGGACAACGCAGACATTTCTCCGTTTTAAAGCTGGAGTAAGCGATAATGAGAAGCCTTGTTAGAGCGCTAGGATTTTTGGGACGTTTCTTTATAAAATGTTCCAGTAAATGAGTCCAGagccttcctgtttttctttcttgcagttTGTCCGGGATGTAAATTTGAAGAAATGGACCAAAATCGAAACGTTTCCTGTATGTGGTATCTCTGTAGTGTAGTTATGATTTAAATACTTCAGTGAAGGCTACAAGtgttttatgttaaaattaGAAATGTAAAGAGGAGCTCGTACGTGCTGTTTTCTCTACTAATATAGGAGTTATGATGCATGGATGGATCGATAGACAGAAAGATCAAGGACATAgttacatgtttacatttccCGTTAATCACTAAAGACTCGTTACAGGTTTGTCTGTTTGCCTTTTTGCTGTTGATCAGGTGTTTAAATCACACGGTCGGTGAGAGATGGGTTGAGTTTTAAGATGCAGTTTGGATTAAACACAGCAGATTCTCATGTTCATGTAAAACCAGTGTTGCATCAGCAGATGTGCAGAATAAACGTCTTACTAAACAAAAA

Function

GO:

id name namespace
GO:0032536 regulation of cell projection size biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242401 lncRNA downstream 225468 3171262 ~ 3174277 (-) True G204664
TU242266 lncRNA downstream 324057 3073977 ~ 3075688 (-) False si:dkey-283b1.7
TU242256 lncRNA downstream 360093 3034246 ~ 3039652 (-) True si:dkey-283b1.6
TU242241 lncRNA downstream 366517 3028815 ~ 3033228 (-) True G204524
TU242232 lncRNA downstream 428876 2965883 ~ 2970869 (-) True G204518
TU242842 lncRNA upstream 187235 3601002 ~ 3602239 (-) True G205038
TU242834 lncRNA upstream 203404 3617171 ~ 3620119 (-) True G205030
TU242844 lncRNA upstream 216927 3630694 ~ 3631383 (-) True G205040
TU242874 lncRNA upstream 290516 3704283 ~ 3738959 (-) True G205063
TU242898 lncRNA upstream 355088 3768855 ~ 3776450 (-) False kcnc3a
XM_026916046.2 mRNA downstream 3389 3353165 ~ 3396356 (-) True abcc1
XM_026917135.2 mRNA downstream 127775 3247701 ~ 3271970 (-) True LOC113528532
XM_026916075.2 mRNA downstream 180818 3214486 ~ 3218927 (-) True cd2bp2
XM_034309806.1 mRNA downstream 185810 3200147 ~ 3213935 (-) False prr14
XM_026916752.2 mRNA upstream 2632 3416399 ~ 3435123 (-) False gspt1l
XM_026916751.2 mRNA upstream 2632 3416399 ~ 3435123 (-) True gspt1l
XM_026916849.2 mRNA upstream 23792 3437559 ~ 3467406 (-) False pdxdc1
XM_026916846.2 mRNA upstream 23792 3437559 ~ 3467406 (-) False pdxdc1
XM_026916845.2 mRNA upstream 23792 3437559 ~ 3467406 (-) True pdxdc1
XR_003402972.1 other downstream 243036 3156617 ~ 3156709 (-) True LOC113528657
XR_003402970.1 other downstream 244315 3155296 ~ 3155430 (-) True LOC113528655
XR_004579338.1 other downstream 799393 2599709 ~ 2600352 (-) True LOC117598767
XR_004579451.1 other downstream 1391957 2003534 ~ 2007788 (-) False LOC113527889
TU243007 other upstream 626714 4040481 ~ 4044575 (-) True G205173
XR_004579349.1 other upstream 679146 4092913 ~ 4117643 (-) False dcaf7
XR_004579368.1 other upstream 1308650 4722417 ~ 4734886 (-) False mlx
TU243400 other upstream 1314327 4728094 ~ 4734805 (-) False mlx
TU243535 other upstream 1675569 5089336 ~ 5091922 (-) False G205633

Expression Profile