RNA id: XM_034310014.1


Basic Information

Item Value
RNA id XM_034310014.1
length 2286
RNA type mRNA
GC content 0.54
exon number 17
gene id tbc1d17
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1854742 ~ 1870170 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACGTGACACATTCGTCATGTGATGTGTGGGCGGGGCCTGGTGTAAAGGGCCGGAGGTGCGTCGCTTGTTTTGGTATTTTGGTggaaattgtaatcattatCTACGCAGGAAGATGGACACTAAGCCTGAAAACAGCAAGCTGATTTTTGAGAAGGAAGGCGTTTACCTCCACACCAACGCCAAGAGGAGCAACGAGGAGACCTCCATCCCCGGCTTCATCCGCATCGTAGAGCggGACGGAGAGCCGGCGCTGGAGTGGAGACCTGCTCAGGATGAGGGGAAAAACGCACCCGCTGTCTTTTACACTAAAAAGGAcggagaaggaggagaggaggagacgAATTTCGACCCCGGGTACGAGCCGGACTGGGCCGTCATCAGCACGGTGaagaagagcagagagaaagaacagcCTCCCGTCAGAGAGACaggtcagtGGGGTGCGTTCTCCCTGCCCCTGTCGGAGCTGTACTCCCTGCGTCGTGCTCGTTTCTCTCTGGGGAGGAACTTTGTGGTGTTGACGAGTCGAGGAGGCGACCCTCTGCCCCCGCTGCACTTCCACAGGGGCGGAACACGGGAACTGCTCCGAGCCATGCAGAGATACATCCGACTCGCACCgtcccCAGTGGATGGACGGTTGTTCCTGGCATACCCTCATGACTCCggtgctctctctcactcgttcGACGAGCTGCAGATGTTTGATGACACCAGCTCAGACCTCGTATCTAGGTTTATCCAGGACCCCTACGCGACCACGTTCGGTGGCTTCTCCAAGGTGACGAACTTCTTCCGAGGAGCGCTGAGACCTCCGGAGTCGCCTCTGCATTCCCAGGGAGAATCATACGCACCTCGCTTATCCGACGACGAGCCCGGATTCGAGCTCATAACCTGCCAAGGGGCGGAGCTTGGACCCCGGCCCAATGTGAGCAGAGGGCGGCCTCTGGACGACTGGCAGCAGTTTCTGGACTCGGATGGCCGCGTCACAAATCCACAGAAAGTCAAGGAGCTGGTGTTCAGAGGGGGCATCGTTCCTTCTCTGCGGAAGGAGGTGTGGAAATTCCTTCTGGGATTTTATCCCTGGAACAGCACAGCCAAGGAGCGGGAGGATATCGTTCGAACGAAAACAGACGAGTATTTCAGGATGAAGGTCCAGTGGAAGTCGATCAGCGAAGAGCAAGAGATGAGAAACTCCCTCCTCCGGGGATACCGCAGCCTGATTGAGCGTGACGTGAatcggacagacagacagaatccGTTCTTCTCGGGGAACGAGAACCCGGGCCTCATGCTGATGAACGACGTGCTCATGACCTACTGCATGTATAACTTTGAcctggGTTATGTTCAGGGTATGAGTGATCTCCTGGCGCCGCTCCTCTTCGTCACTCAGAATGAAGTGGAGTCTTTCTGGTGTTTAACCGGCTTTATGGAGCTAGTGCATCAGAACTTTGAGGAATCTCAGGAGGCGATGAAACAGCAACTGCTCCAACTCAGCCTTCTGCTTCGAGCTCTCGATCCTGAGCTGTGTGACTAcctggACTCTCAGGACAGCGgctctctgtgtttctgcttCCGCTGGCTGCTCATCTGGTATAAGAGAGAGTTCTCCTTTGAGGATATCCTGCACCTCTGGGAGGTTCTGTGGACTCGTCTGCCTTGCGCTAACTTCCACCTGCTCATGGCCTGCGCCATCCTCGAGTCCCAGCGGGGGGAGCTGATCGGCTCGAACCACGACTTTAACACAATCCTCAAGcacATCAATGAGCTGACCATGAAGCTGGATCTGCAGATGATGCTGCGGGAAGCTGAGGGGATTTATCTACAGCTGGTCCAGTGCaaggaATTGCCGGCGAAGGTTCGGGAAGTTTTGGGAATGTGCGTCACTTCCAGCTCGGACGAGGAGAGTTCTGAGTCGGAGCccagagagacggacagactGCTCAGCGAATCAGCTGCAGGGGGCGTGGCTGTTTGTCAATCAAGTAACCAGAACGCTCCACCTCGCCCGCCTCCTACTTACCCATAATTCCTGTATATACACGTTGCTGCTGCTTAGGAATTCTAAACGCTATATAACACATAAGTACATGACATAACTGTTCACAAAGAGTTATTAATGCTAATGAACTTTTATAGAGTTTTTCTGAAGAGCCTGAGAGAACGTGTTACTTTATATTACTGTACCTCACAGGAAGGAAAAACCAGAGAATACCCAATATAGTCgtgttttaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagaga

Function

GO:      GO:0005097,GO:0032313

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241458 lncRNA upstream 12162 1840338 ~ 1842580 (+) True G203867
TU241477 lncRNA upstream 29449 1824978 ~ 1825293 (+) True G203885
TU241234 lncRNA upstream 288113 1565356 ~ 1566629 (+) True G203672
TU241224 lncRNA upstream 321697 1522226 ~ 1533045 (+) True G203662
TU241222 lncRNA upstream 353949 1446989 ~ 1500793 (+) True G203660
TU241508 lncRNA downstream 35669 1905839 ~ 1922479 (+) True G203906
TU241496 lncRNA downstream 47035 1917205 ~ 1940770 (+) False ppfia3
TU241516 lncRNA downstream 48853 1919023 ~ 1987215 (+) True G203913
TU241543 lncRNA downstream 138231 2008401 ~ 2008606 (+) True G203935
TU241566 lncRNA downstream 284266 2154436 ~ 2159283 (+) True G203955
XM_026917152.2 mRNA upstream 15404 1828671 ~ 1839338 (+) True zgc:195001
XM_026916920.2 mRNA upstream 28674 1816311 ~ 1826068 (+) True emc10
XM_026916921.2 mRNA upstream 28837 1816311 ~ 1825905 (+) False emc10
XM_026916127.2 mRNA upstream 130944 1678312 ~ 1723798 (+) True lrrc4ba
XM_034310056.1 mRNA downstream 12882 1883052 ~ 1889515 (+) True ccndx
XM_034310055.1 mRNA downstream 20115 1890285 ~ 1903186 (+) True nucb1
XM_034310208.1 mRNA downstream 63304 1933474 ~ 1987915 (+) False ppfia3
XM_034310212.1 mRNA downstream 63304 1933474 ~ 1976884 (+) False ppfia3
XM_034310209.1 mRNA downstream 63590 1933760 ~ 1987915 (+) False ppfia3
TU241220 other upstream 263667 1561594 ~ 1591075 (+) False syt3
TU241205 other upstream 498415 1353334 ~ 1356327 (+) False kmt5c
TU240880 other upstream 618130 1220512 ~ 1236612 (+) False paqr4a
TU240783 other upstream 803603 1046805 ~ 1051139 (+) False armc5
TU240808 other upstream 1096684 753275 ~ 758058 (+) False fus
TU241504 other downstream 12905 1883075 ~ 1885478 (+) False ccndx
XR_004579364.1 other downstream 285429 2155599 ~ 2155849 (+) True LOC117598829
TU242114 other downstream 1133502 3003672 ~ 3012859 (+) False pyya
TU242330 other downstream 1322542 3192712 ~ 3200133 (+) False LOC113527909
TU242670 other downstream 2096588 3966758 ~ 3986284 (+) True limd2

Expression Profile