RNA id: XM_034310018.1


Basic Information

Item Value
RNA id XM_034310018.1
length 1793
RNA type mRNA
GC content 0.56
exon number 6
gene id akt1s1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1841989 ~ 1859709 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTAAACAGCTGCGCGCGTGCGCGTCCAGTCTcggttggagagagagagagaccaagaagaagaacagaagaagaaaaataataatacaagataaaaaccaaaacaacaaaaaaaagttgaaagaaTTTCGTGCGTCATCATCAGCGAGCGGCCGCGTCCCTTCTCGTCCCGTCTCTCCCCTCAGCTCTCTGAGACGCAAACCAGGCTGTACTCATCACCTataagctaacacacacacacacacgcacacactgaacactacacactacacacggATCACCTCTGTGTCCTGTTTGATGTGATACGAGCGTCCGGCGTTATCTGACGCTTCGTCATGGCCTCCGTCTCCAAAACCTCCGAGCTGGACATCCCGGATAACCACCAGGAGAGCTGGCTGGCTCTGCTCGCCGCCGCCGAGGCGTACAGCCAGAAGTCGGGCTGCGACCTGGCCATCCTGACCGCCTGCAAGAAGTTCCTCCTGTCTGGCGCCGAGGGAGACGCTACGAAAAAGAGAGAAGGGGGCGGAGCCGTGTCGGCGGGAAGCAGGAAGTGGGATTACGGCTATCACGTGTGGGGTCAGGGGGCGCTCGCCGAGGCGTCACGCCGATACCTGGACGACATCGGCGTGCTCCATTCCACCACGGTGCTCACGGCGCAGAGACACGCCCGCCTCGCCGCAGGAGAGGGCGGGGCCAAACTGGGCGTGGACATTCCCTCTGATAGGCCGACGTCGGTGGGTGACGGAGGGTCGGGCTCGGTCAGTCCCGGGCTGAGACTTTACTCTCACAGCTACCCGTCCATCTACAGTCCGGCGGCGGTCAGCGTCCTCCCCTCGGCCCAGCAGGGGAacggagggagagagagagacagagcggcTCTGGGGGAGGtggagagagcgagggagagagccGGCATCGTGGacctggaggaggaagaggaggaggacggAGAGGAGGACGATATGGACGGACCCAGACGCAATCTCAACGAGTCGacagGCGTGTTCTCCATGGATGAGGATTCTCTGTCTCACGACTGTGAGCCGTTTTTCGAGTCGGATGGTGAAGAGGAAAGCACTGACGgttCTCTGAGTGAggaagctcctcctcctcctcgagGCCTGGCCATGGGTCACTCGGTTCTCTCTCGCCTGTCTCACCCCACGGCCCTGGCGCGCTCGCTGCCCGTCTCGGTGCCTGTGTGGGGCTACAGGAACAACCGGACAGCGCAGGGCGACTCTCACAGCGGAGAGCGGgtcgGCTGTGCGGATCTTGATCACATCGCCGCCAGCATGAAGGCTCTTTTAGCTCCAGCAGCCACCGATGGAACAGAGATGTTCGGAGCGCTGCCTCGACCCCGACTCAACACCGGCGACTTCTCTCTCAAGCACTGATgatggacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagaaacgaATTCTGAGAGACATAACGTGAGACGAGACGTGTGTGAAAACGAACTGGGATGTAAATACGACCCGAACCTGTTATTTTTTAGACTCTGAGACAGATTTCAACATTTAATGCGACGAAAATCTTTACTaaccttcctttttttttttcttcttcttcccaaGGCAGTAGGAAAGACCAAGTTTGAGTTTCGAGATGTTATGGATCTGTATCGAGCTGTTCTAGGATCAGTGTTTGCCTTTTGTACGCTGTAATTGAATGTAGCTGTGTGTTTGGAGAGGAGTTGATCCTGGATCAGCGGGgagttctcaaaaaaaaaaagaaaagaaaagctgcGTTCA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241720 lncRNA downstream 75120 1766651 ~ 1766869 (-) True G204090
TU241717 lncRNA downstream 91598 1750182 ~ 1750391 (-) True G204087
TU241714 lncRNA downstream 106269 1735518 ~ 1735720 (-) True G204084
TU241710 lncRNA downstream 110789 1731001 ~ 1731200 (-) True G204080
XR_004579328.1 lncRNA downstream 123198 1718013 ~ 1718791 (-) True LOC117598750
TU241689 lncRNA upstream 5933 1856423 ~ 1871551 (-) True G204060
TU241748 lncRNA upstream 16802 1867292 ~ 1867937 (-) True G204107
TU241733 lncRNA upstream 18008 1868498 ~ 1905038 (-) False G204095
XR_004579385.1 lncRNA upstream 19634 1870124 ~ 1870685 (-) True LOC117598839
XR_004579386.1 lncRNA upstream 19722 1870212 ~ 1870785 (-) False LOC117598839
XM_034310229.1 mRNA downstream 29945 1767306 ~ 1812044 (-) False mybpc2a
XM_034310228.1 mRNA downstream 29945 1767306 ~ 1812044 (-) False mybpc2a
XM_034310227.1 mRNA downstream 29945 1767306 ~ 1812044 (-) True mybpc2a
XM_026916145.2 mRNA downstream 525814 1309888 ~ 1316175 (-) True LOC113527946
XM_034309793.1 mRNA downstream 535626 1302401 ~ 1306363 (-) True LOC113528189
XM_034310295.1 mRNA upstream 140683 1991173 ~ 2013251 (-) False LOC113527889
XM_034310296.1 mRNA upstream 140683 1991173 ~ 2012490 (-) False LOC113527889
XM_034310294.1 mRNA upstream 140683 1991173 ~ 2012461 (-) False LOC113527889
XM_026916040.2 mRNA upstream 140683 1991173 ~ 2007775 (-) True LOC113527889
XM_026917008.2 mRNA upstream 215687 2066177 ~ 2077477 (-) True LOC113528455
XR_003402974.1 other downstream 342384 1499515 ~ 1499605 (-) True LOC113528659
XR_003402975.1 other downstream 342639 1499261 ~ 1499350 (-) True LOC113528660
TU241260 other downstream 496818 1265662 ~ 1345171 (-) False G203695
TU241084 other downstream 795434 1044737 ~ 1046555 (-) False si:dkey-66i24.7
TU241063 other downstream 930761 910117 ~ 911228 (-) True G203544
XR_004579451.1 other upstream 153044 2003534 ~ 2007788 (-) False LOC113527889
XR_004579450.1 other upstream 153044 2003534 ~ 2007787 (-) False LOC113527889
XR_004579338.1 other upstream 749219 2599709 ~ 2600352 (-) True LOC117598767
XR_003402970.1 other upstream 1304806 3155296 ~ 3155430 (-) True LOC113528655
XR_003402972.1 other upstream 1306127 3156617 ~ 3156709 (-) True LOC113528657

Expression Profile