RNA id: XM_034310025.1


Basic Information

Item Value
RNA id XM_034310025.1
length 2809
RNA type mRNA
GC content 0.42
exon number 14
gene id LOC117598840
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20394684 ~ 20400475 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGATGCGCTGGAGGCAAAGGAGACCCAGGCGCAGGAAGCAAATGCACCAGATGCCCAGGCGCAGGAGGCAAAGATGCAGGAAGTTCAAACCCAGGAGGCACAGACACAGCCGGCGCGGAGAGGGCGACGTCCTAAATTAGTTAAACAAGCCAGTAGCGTATCTAAGTCAGATGGACAAGAAGAGGACAAATCTGATGTGTCAGAAGCGgATGAGCGTCTGGAAGGCAGAGTGACCCGCAAAGGACGATGGTCCAGTCAGAGAGCAGCGTCAGCCAAGGAAACTGcATCCAAAGCTCAAAACAGTCAGGAGGCCAAAGACACAGAGACTAACAAACCATCGCATAAAAATAGTGAGGATGAGGAGGTTGAAGATGGAAGCAGAACTACACAGAAAAGATCGTCTAAGGTCCCAGATGCTTCACAGAAAGAAGCTTCATCGAAGCCTGAAGAAGCAGAGCCAACAGGAGAGGAAGTGGAGCAAAAAGAGgcGCGTAGAGGAAGGCGTTCTGGAGTTCAGACAGCCGCTGTGGCTAAACCAGCACTGAGGAGAAAGAGGTCTGACCAAGCTGAGGATCCTGAGAAAGTAGGAAAAGAACTTGCAGCTgaggagaaggaagaggagCCTGTGAAGAGAGCACGACAAGATAgtgagagtGTGactgaggaagaagaggaaggaaaagaggagaaaaaagaagaggacagagaaacagagagctCTAAAGAGAAGGCTGAGGAAGAGGAACCAGTGAGAAAGACTCCACGGCGAGGCAGATCTTCAAAAAACACTTCTAACGTGGATGACTCGGcagccccagagaagagagagggagagacagagacaggagaagaggatgaaaaacaggaagaggaagaaacaAAAATTAGAGCAACAACACGTTCTGCATCTCGGCTGGAGGCTGAGAAAAATAAGCCAAGTAAGCCATCAACCAGAGCGGTGAGCAAACTGAGCGGGAAGGAAGAGAGCTCTCCAAACACACGTTCCTCTCGTTCTCAGAGTGCTGCTGCAGTAAAGGGCCGTAAGGGCGAGTCGAGTTCTCCAACACCTCGGACCCGCGCCGGCCACAAAACTGAAGAACCGCCCTCAAAGAGGACCAAACGatgatgtgtatttgtgtatattatgtatgtatgtagccCAGTCAGCTTTATGTTTATTACGTATTCCTTGTCCAGTGCAAACAGAGTGGCTCTGTGTGGCTGTTCCACTGTAATGACATCGGCATTTAACATGATCCCTCCCAGCTGCAGATGTCACACGGAGACGTGTTTTTAACTCACTGACACTCTCCTGCTGACCAGCTTTACGCGCTCAGGATTGTGACCATGCAGTAAGTTTTATAACCAGCATTTATGAGCAGTACTGAATTGTTTCTAATGGCGTtatgtttgtctgttttcttcTTGTGTACAGTTTatctcaaagttccagaatattttgatctcaaaacatattttcagAAAGTTGTGGACAAAGCACATTCTGCTTACTCCAAGTACAAACCCAGAATGTTCTAGAATGCATTTCCAGAAAGTCATATAACCAGAAATCACCGTGTTTTCTCTACAGCACGCAATgtgtattgtaatttttttttttctctccaagaAAAGTGCTAGACACAGAACATGCCATTATTGCTGTGTCCTAGTTGCTGTGAAGTTGCTGTATTTGTGCTAAAGAATTCCCTAGAATTATAACAGGTTCTGCTTTTCCTGTTGGAGAACATGAAAAGCACATGTTCTTTCAACTTTTTGAAAGTGTTCTAAAATGCGTTTTCAGAAATACCTAGAACCAGAACGCTCTTTGCTTTCGTTGTAGGACACAGTGTGTTCTAGaacattttttaagaaaactgCTAGAATCAGAGCATGCTATTATTACTCTCCAAAGTGTTCTAGAATGCATATACAGAATGTTCTAGAGCCATCATATCACATGATCTGAGGTAAAACCTTAGTGTTCTGCATCCAGAAGGCTATAGAATTCCAAGAACAATAACTCACATTGCTTTCCCTGTTAAAACATGAAAAGAGCACGTTTTAGAACTCTCTAAAATGCGCTGTCCAATATATTTCAGAAAGAACCACGCTGTGTTCCCCTAGTGTTCTAAATAGTGTAGTTAGTAATGGGTAAACCAAGAAAATTATGTGAGAATCAAATTCATTACACACAAATACTGGTGGGGAAATGTGTGCTGTAGCCTAGATATATTTCAGAACAGGTATCCGTTATATACACAGCATATATACCGTTTTAAAATCCTGTGTTAGATTCTCACACTGAAAGGAACTCTGCTAATAGACATGTGCCAATAATCAATTAcaaaatataacacaatatcCTGATGGAACATTTGAATGTTGGTCTaactgattttttccccccaaaatcTGGCAAGGTACGTAACAATGTGGGAATACTGTAAACCTTGAAAAAGCCATTGGTAAACCTTGGTAAATGATGGTGATATGAACATATTGCTCAAACCAATCCACTTTAAATACAGTACTATTTACACTcctagaaaaaaaaggttctatCTAGATGTATTTTTTCCCTAAGAGTGTATATGTTACTTGTTCCACAGAGTGAAAAATATGTTTAGTTTATTATGTCTTATGTGTCATGTGTATTTTATCTGCTGAGCCTGTTACTGTGTTCAGTTGCATTTGTGCTGATCCTGTTGGCGTGTTCAACATGAAGACACTCATTCTGTGAATGTAAAGAACTGAGCTATTTCTTTTCTACATTTAGCTTTTATTATAAAGGCCACTGGGACCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253634 lncRNA downstream 187539 20205794 ~ 20207145 (-) False hs3st1
TU253590 lncRNA downstream 338540 20020552 ~ 20056144 (-) True G214159
TU253468 lncRNA downstream 410535 19940354 ~ 19984149 (-) False lyar
TU253270 lncRNA downstream 730922 19663337 ~ 19663762 (-) True G213879
TU253100 lncRNA downstream 972269 19417184 ~ 19422415 (-) True G213716
TU253789 lncRNA upstream 35577 20436052 ~ 20438834 (-) True G214325
TU253795 lncRNA upstream 45048 20445523 ~ 20445748 (-) True G214331
TU253976 lncRNA upstream 378290 20778765 ~ 20781702 (-) True G214493
TU254012 lncRNA upstream 440956 20841431 ~ 20841634 (-) True G214526
TU254118 lncRNA upstream 499610 20900085 ~ 20904041 (-) False spry1
XM_026916964.2 mRNA downstream 8059 20383757 ~ 20386625 (-) True nkx3-2
XM_026916169.2 mRNA downstream 20108 20342473 ~ 20374576 (-) True rab28
XM_026916170.2 mRNA downstream 20108 20344023 ~ 20374576 (-) False rab28
XM_026917223.2 mRNA downstream 181055 20205339 ~ 20213629 (-) True hs3st1
XM_026916091.2 mRNA downstream 199171 20177265 ~ 20195513 (-) False LOC113527919
XM_034309810.1 mRNA upstream 5 20400480 ~ 20412128 (-) True bod1l1
XM_026916159.2 mRNA upstream 13625 20414100 ~ 20418381 (-) True aurkb
XM_034309805.1 mRNA upstream 19283 20419758 ~ 20424672 (-) False tmem107
XM_026916948.2 mRNA upstream 19287 20419762 ~ 20424672 (-) True tmem107
XM_026916811.2 mRNA upstream 26284 20426759 ~ 20430515 (-) True LOC113528321
TU253598 other downstream 331194 20040423 ~ 20063490 (-) False slc2a9l2
TU253095 other downstream 946350 19444989 ~ 19448334 (-) False rbbp6
trnat-cgu_6 other downstream 1318344 19076269 ~ 19076340 (-) True trnat-cgu_6
TU252457 other downstream 2017321 18376077 ~ 18377363 (-) False LOC117598999
TU252076 other downstream 2541045 17828167 ~ 17853639 (-) True tsen54
trnal-aag_9 other upstream 12374 20412849 ~ 20412930 (-) True trnal-aag_9
TU254170 other upstream 613964 21014439 ~ 21027259 (-) True fgf2
LOC113546932 other upstream 1271687 21672162 ~ 21683433 (-) True LOC113546932
LOC117598919 other upstream 1272347 21672822 ~ 21673330 (-) True LOC117598919
LOC117598868 other upstream 1275163 21675638 ~ 21676807 (-) True LOC117598868

Expression Profile