RNA id: XM_034310053.1


Basic Information

Item Value
RNA id XM_034310053.1
length 2413
RNA type mRNA
GC content 0.46
exon number 11
gene id bcat2
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2092559 ~ 2114069 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGTGTCGTCCAATCAGAGgcattCTGTGGGCGTTTCCTGCAGCCTCTCCCCGTGTATTCGGGATCTCTGCGCTTCGCCAGTTCGTCTTTCAAGGCTGCAGATCTGACCATTGAGAAGAGGCAGACGCCGAACCCCAAGCCCGACCCGTCCAACTTGGGCTTTGGGAAGTTTTTCTCTGATCACATGTTGACTGTGAAGTGGTCGGAGAAAGGAGGATGGGAAGCTCCTCAGATTAAACCCTTCCAAAACCTGTCGCTCCACCCGGCGTCCTCCGCCCTGCACTACTCCATCGAGCTGTTTGAGGGGATGAAGGCGTTCCGCGGAGTGGATAATCAGATCCGTCTGTTCCGGCCCATGCTGAACATGGAGCGCATGTATCGCAGTGCAGACCGCTGCTGCCTGCctCTGTTTGATAAGAGCGAGCTGCTGGAGTGCATTAAGAAGCTGATCGAGCTGGACCACGAGTGGGTTCCGTACTCCACCAGCGCCAGCCTTTACATCAGACCCACCTTCATCGGCACTGAGCCTTCTTTGGGCGTGTCTCAACCAAGCCACGCCCTCCTGTTTGTCATCGTGGGGCCGGTGGGGCCGTATTTCGCCACGGGAGCCTTCAGTCCCGTGTCCCTGCTGGCGGATCCTCGCTTCGTGCGAGCCTGCAGGGGCGGAGTGGGAGCGTACAAGATGGGCAGtaacTATGGGCCCACTATAGCCATCCAGGTCGAGGCGGTGAAGCAGGGCTGCCAGCAGGTGCTGTGGCTGTACGGCGACAGAGAGGAGATCACTGAGGTCGGCACCATGAACCTCTTCATCTACTGGACCAATGAGAAAGGagAGCGAGAGCTGGTCACCCCTCCACTAGACGGCATCATTCTCCCCGGAGTCACCAGACAGTCTCTCCTGGACCTGGCCAGGGAgtggGGTGAGTTTAAGGTGACGGAGCGGACGCTGGTCATGAAGGAGCTGCTGGACGCTCTGAACGGAGGACGGGTGTTGGAGGTGTTTGGGGCGGGGACGGCGTGTGTGGTGTGTCCCGTCGGCAGCCTGCTCTATAAAGGACAGCACTTTGAAATCCCGACCATGAAGAACGGTCCTGAGCTCGCCACCAGGTTCCACAAGGAGCTCACCGATATCCAGTACGGACGCACGAGGAGGGACTGGGCGCCGGTCATCGTCGCCTGATTGGACCGCTTTCCTCCAGTCACCTGCCGGCTGCTCACATTCACACTGTAGCCTTGATTTCTCTTATGTTACGTGTAGAGACTGAAAAGGCTTTACTGTTCTAAAGTAACCATTTTAGTGAGCGGTCCATTGGAAACCTGTCACTGATCAACTGGTAATGAACGCAGcaaaaaccaccaccaccaccaccaccacacctcTAACACACGTGCATGTTTGTCTGATAGAAATGtcgtttcatttttataataaatttatccAGCCTCGAGAGTGCGTAGTGCAACGTGTAGCAATAGAGCAGCTGTGAGGTTAAAAATACGAAGCACAATATATGCAAATGACGTTGGTAGAAATATCGTAAGTGCAATAAGGTTCAAATCGTCTGCTTGTGGAATTGTTGAtgattacttgttttttttgttttgtttttgtttttttcttttaaacggGTGAGCTAACTTTAGCCGCTAACACAACCATTTCTGTGTGTTCTTCCAACGGATGTGAACATTTAGACTAGTTACAAGTCTCACTCATCGATCTGTTATGTTTACCATcgcctttattattattattattagtagtagtagtattattattaacatatagTTTAAAATCAGGTTTTGATGTTTTGTATACGTGTAAttgcagagaaaataaatgttcagaaatTTAACAAAGTAGTGGCATCATACAGTGCtctccagaaatattggcacccttcatgaagcagagtgttttgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaacactaacaaatgtagtaagtgatattttgagcttaatAAAACCAGGACATTGTATTTGGGTGggggaaaatgtttaaataaaacactatacGCTCCAACCCCcctcaaaattattggcaccctgccTTGGAGAGAATTCGTTAAAATATCCCTTAGGGGTGTCAATaatcacaaattttttttttttcttttttttttttttttccgagaaattttgtttgggtgtgtgtaCAGCGACCaagtgcgtgcacacacacacacacacacacacacacacacacacacacacacacaccctaattgcattattatattattattatttttaattgttgatCAGTAGTTCTTAATAGAATGAGTAATTGTTCCTGTTGAGGggaaattttaattgttttgtgtttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241543 lncRNA upstream 83953 2008401 ~ 2008606 (+) True G203935
TU241516 lncRNA upstream 105344 1919023 ~ 1987215 (+) True G203913
TU241496 lncRNA upstream 151789 1917205 ~ 1940770 (+) False ppfia3
TU241508 lncRNA upstream 170080 1905839 ~ 1922479 (+) True G203906
TU241499 lncRNA upstream 220999 1856423 ~ 1871560 (+) True G203898
TU241566 lncRNA downstream 40367 2154436 ~ 2159283 (+) True G203955
TU241570 lncRNA downstream 69168 2183237 ~ 2186164 (+) False rundc1
TU241577 lncRNA downstream 84044 2198113 ~ 2198333 (+) True G203965
TU241588 lncRNA downstream 110480 2224549 ~ 2227164 (+) True G203973
TU241581 lncRNA downstream 144413 2258482 ~ 2260374 (+) True G203967
XM_026916139.2 mRNA upstream 1106 2084552 ~ 2091453 (+) True hsd17b14
XM_034310160.1 mRNA upstream 31489 2012233 ~ 2061070 (+) True slc1a9
XM_034310209.1 mRNA upstream 104644 1933760 ~ 1987915 (+) False ppfia3
XM_034310210.1 mRNA upstream 104644 1933850 ~ 1987915 (+) True ppfia3
XM_034310211.1 mRNA upstream 104644 1934573 ~ 1987915 (+) False ppfia3
XM_034310161.1 mRNA downstream 16459 2130528 ~ 2174611 (+) True grna
XM_026917227.2 mRNA downstream 63614 2177683 ~ 2184590 (+) True rundc1
XM_026917270.2 mRNA downstream 73296 2187365 ~ 2195026 (+) True rpl27
XM_026917021.2 mRNA downstream 84680 2198749 ~ 2212411 (+) True slc25a39
XM_034309962.1 mRNA downstream 125540 2239609 ~ 2258256 (+) True nbr1b
TU241504 other upstream 207081 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 501484 1561594 ~ 1591075 (+) False syt3
TU241205 other upstream 736232 1353334 ~ 1356327 (+) False kmt5c
TU240880 other upstream 855947 1220512 ~ 1236612 (+) False paqr4a
TU240783 other upstream 1041420 1046805 ~ 1051139 (+) False armc5
XR_004579364.1 other downstream 41530 2155599 ~ 2155849 (+) True LOC117598829
TU242114 other downstream 889603 3003672 ~ 3012859 (+) False pyya
TU242330 other downstream 1078643 3192712 ~ 3200133 (+) False LOC113527909
TU242670 other downstream 1852689 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 1852689 3966758 ~ 3986284 (+) False limd2

Expression Profile