RNA id: XM_034310058.1


Basic Information

Item Value
RNA id XM_034310058.1
length 1321
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC113546924
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 23147197 ~ 23156708 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACATCTTTTAAAGAAGACCTTCCTTGCTACCTGCTTCTGACTACTTTCTTGTTAAGAGCAAGATGATGTCATACCTGGCAAAGATTGTTGAAGTTGGTGGGAACGAAGGAagtgcttttaattttaatggtaCTGAAAATGGAACCATGTTGAAAAAGATCACGGTGTGGGTCGGTAAAAAGAAGGTGAAAGCCATTAAAGTTCAGCTTACTGATGACCAGTCTGAGCAGTTTGGTGTACTTGATGGGAAAGTTTCAGAATTCACATTTGAAGATGGAGAGAATTTCACCTCCCTTTCACTTTGGGAAAATGGAGATGGAACACGTCTGGGTGGCATCAAATTCAAGACAAATCACTCCCGGGAGTTCTCAGCAAGCATGAGCATCTTGAATTCAAAATCAGTAGTTCCAGTTGATGTTGCTTCTGGGATCTGCATGGGAATCAAAGGACGTGCAGAGATGTCCAAAAGTCCGGGGATTAGTTCCTTAGGCTTCATGTTCATTAACACCATCAAGTCTGCTGAGCTTACAAATGTTGAGTATCCCACACTTCATGATGTGATACCCAAAGTAGCTGTCAGGGAAATCAAATCCATGACCTACCAGAATAACACTACTAAAACTCAAGAATATAGAATTGAAGCCTCCAAAAAAATCACCCAGACATCCTCCTGGTCTGTTACCGGCAGACTGGAATTCATGGTCAGCCTGGAAGTTAAGGCAGGAATTCCATTAATTGCAAATGGCACAGCAAGATATGAACTAAAAAAGGGAGTTGTGGGTACATATGCTTCGGAGACCACTGAAGAGAAAATGAAGCTCTTcttgtttcctgttaaagtccgtCCAGATACATCCGTGGATGTGGACATCACAATTGGCCAGGCTACAGTTGATCTTCCCTTCAATGGCATAGTCAAGATTACCTGCCATAATAACAGTGTGCTGCAGTTTAAAACCAGTGGAACCTACAAGGGTGTCACTTATACTGATGGAAAAGTAGCTGTGAATGAATCAGCCAAAAAGCTTGATGGGGCCTCACAGGCTTTGAACTAAATTGTAAAAATGGTTCTAAAAGTTCAGTATAATGAATCTCATATATTAGATCATTCaaactgaaaatgtgtttgACGCTAGCTTGGTTTAAATgatttggttttattattagcttttcATAATCATAATGATTCTCttgtctgatttgtttttttcataatcTGTAAACCTTTTAAAACAGTGACTTCATTTATCCTGCTAGGCTTCCAGTGGTGCAGACCCATATTTtttgattaataaaacattctttaaaaaacattcTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255274 lncRNA upstream 111538 23035455 ~ 23035659 (+) True G215479
TU255271 lncRNA upstream 119578 23026443 ~ 23027619 (+) True G215476
TU255220 lncRNA upstream 217400 22929488 ~ 22929797 (+) True G215425
TU255144 lncRNA upstream 238119 22841344 ~ 22909078 (+) True G215350
TU255449 lncRNA downstream 74810 23231518 ~ 23298835 (+) True LOC113546955
TU255448 lncRNA downstream 133578 23290286 ~ 23298835 (+) False LOC113546955
XR_003404766.2 lncRNA downstream 133626 23290334 ~ 23298702 (+) False LOC113546955
TU255458 lncRNA downstream 158461 23315169 ~ 23315568 (+) True G215638
TU255457 lncRNA downstream 160118 23316826 ~ 23317147 (+) True G215637
XM_026947058.2 mRNA upstream 3437 23141714 ~ 23143760 (+) True LOC113546949
XM_026947025.2 mRNA upstream 321964 22781366 ~ 22825233 (+) True pdlim7
XM_026947026.2 mRNA upstream 321964 22786206 ~ 22825233 (+) False pdlim7
XM_026947039.2 mRNA upstream 377561 22765814 ~ 22769636 (+) True higd2a
XM_034310061.1 mRNA upstream 392765 22740940 ~ 22754432 (+) False rnf44
XM_026947060.2 mRNA downstream 3755 23160463 ~ 23163243 (+) True LOC113546950
XM_026947057.2 mRNA downstream 11636 23168344 ~ 23170849 (+) True LOC113546948
XM_026947067.2 mRNA downstream 126540 23283248 ~ 23285620 (+) True atoh1b
XM_026947085.2 mRNA downstream 186253 23342961 ~ 23355343 (+) True LOC113546963
XM_026947121.2 mRNA downstream 301095 23457803 ~ 23554508 (+) True LOC113546983
TU255140 other upstream 311295 22835664 ~ 22835902 (+) True G215347
trnat-cgu_7 other upstream 366840 22780286 ~ 22780357 (+) False trnat-cgu_7
TU255135 other upstream 377570 22765814 ~ 22769627 (+) False higd2a
LOC117598850 other upstream 611421 22495208 ~ 22535776 (+) True LOC117598850
XR_004579446.1 other downstream 574746 23731454 ~ 23740984 (+) True LOC113546919
TU255678 other downstream 585847 23742555 ~ 23748067 (+) False igfbp7
XR_004579369.1 other downstream 1035045 24191753 ~ 24327960 (+) False rbfox1
XR_004579370.1 other downstream 1035045 24191753 ~ 24327960 (+) False rbfox1
TU256099 other downstream 1300362 24457070 ~ 24458004 (+) True G216197

Expression Profile