RNA id: XM_034310068.1


Basic Information

Item Value
RNA id XM_034310068.1
length 3733
RNA type mRNA
GC content 0.51
exon number 18
gene id ddx42
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3935396 ~ 3947545 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCAGAGGGTTTTAACGAGCCTAGCAGTTGTTGTGTAAGCACACATAACACGTCGATTTTTAATGACGTAGCACGCAGCAACGGGCGGCCAAACTGTAAACGACGGTAAAACACGacACCAGACTTAGTGTTCGCGCTTTGTGTAAGTGTTATCAGCCGCTACAGCTATGAACTGGAACAAGGGAGGACCGAGTGGTAAACGAGGGTTTGGCTTCGGAGGGTTTTCTCTCTCCGGGGGTAAGAAAGAGGAGCCTCGGCTGAGCCAGCAGTCCCACAGCGCGTTTGGAAGCTCAGGCTCTGCAGGAGGTTTCGGCAAAAACCAGCAGCTGCCTGCCTTCTACAAGATCGGAACCAAACGCGCCAACTTTGACGAGGAAAATGCCTATTTcgaggatgatgaggaggaatCGAGCACCGCGGATCTGCCTTATATCCCAGCGGAGAACTCTCCTACCAGGCAGCAGATGCaatctggaggaggaggaggaagtggaggaggtggaggaggatcAGACAGCGAAGACGACCCCCTCGATGCCTTTATGGCTGAGGTGGAGAACCAAGCAGCCAAGGACATGAAGAAACTGGaggacaaagaaaaagagaaaaagctgACCAAGGGTATTCGAGATGACATTGAAGAGGAAGATGAGCAAGAGGCTTATTTCCGTTACATGGCGGAGAACCCAACAGCTGGGCTGAtccaggaggaagaggaggagaacgTGGACTATGACAGCGACGGGAACCCCATCCCTTCTACCACTAAAAAGATTATCATGCCGCTTCCTCCTATTGACCACTCAGAGATTGACTACCCTCCTTTCGAGAAGAACTTCTACAATGAGCATGAAGAGCTCAACAGCTTGACTGGAGCACAAGTGGTGGAGCTGAGACACAAACTCAACCTGAGGGTGTCTGGCGCCGCTCCTCCTAAGCCCTGCACCAGTTTCGCTCATTTTGGCTTTGACGAGCAGCTCATGAACCAGATCCGCAAGTCTGAGTACACACAGCCTACGCCCATCCAGTGCCAGGGTGTCCCCATAGCCCTGAGCGGCAGAGACATCATCGGCATCGCCAAAACGGGTAGCGGCAAGACGGCCGCCTTCATCTGGCCAATGCTGGTGCACATCATGGACCAGAAGGAGCTGGAGCAGGGAGAGGGTCCCATTGGTGTGATTGTCTGCCCCACCAGAGAGCTCTGTCAGCAGATCCACACGGAGTGTAAGCGCTTTGGGAAGGCCTACGGCCTGCGCTCGGTGGCTGTGTACGGAGGGGGCAGCATGTGGGAACAGGCCAAGGCTCTACAGGAAGGGGCTGAGATCGTCGTTTGCACTCCGggtcgcCTGATAGATCATGTGAAGAAGAAGGCGACATCCCTGCAGAGAGTGACCTACCTGGTGTTTGATGAGGCTGATCGTATGTTTGATATGGGCTTTGAGTATCAGGTGAGATCCATCGCCAGCCACGTAAGACCAGACAGACAGACTCTACTGTTCAGTGCCACTTTCAGGAAGAAGATTGAGAAGTTGGCCCGGGATATTCTCATTGACCCGATCCGCGTAGTGCAGGGAGACATTGGAGAGGCGAATGAGGACGTGACACAGCTGGTGGAGGTGTTGCCGAGTGGCTCGGATAAGTGGGGGTGGCTGACACGGAGGGTGGTGGAGTTCACCTCGACTGGCTCTGTGCTTATTTTCGTGACTAAGAAAGCCAACTGTGAGGAACTAGCCACCAACCTGCAGCAGGAGGGCTACAGCCTGGGCCTGCTGCACGGAGACATGGACCAGAGCGAGAGGAACAAGGTCATCAGCGACTTCAAGAAGAAGAGCTTGCCTGTCCTAGTGGCCACTGATGTCGCAGCTCGTGGATTGGACATTCCCTCGATCCGTACTGTCATAAACTACGATGTTGCCCGGGacattgacacacacacgcaccgcATCGGCCGGACAGGTCGCGCCGGAGAGAAGGGTGTGGCCTATACTCTGCTCACAAGCAAAGACACCTCGTTTGCCGGCGACCTTGTTCGTAATTTAGAGGGAGCGAATCAGAGTGTCCCGAAGGAACTGTTGGATTTGGCCATGCAGAATCCTTGGTTCAGGAAGTCCCGTTTTAAGGGTGGAAAAGGAAAGAAGCTGAATGTCGGAGGTGGAGGTCTCGGATATAGGGAGAGACCAGGGCTAGGGTCCGATTCATCAGAGCGCAGTAGTGGCTCTGTCCTTGGCAACTACGAGTCCTACAAACCCCCCACTGGAGCTATGGGAGATCGCATGGCTGCCATGAAGCAAGCCTTTCAGGCTCAGTACAAGAACCACTTTGTGGCAGCATCAGGTATCTCTCCCAAGCTTAGTGCGCAGTCAAACAGCACCTCAGGTTGGACAAGTGCAGGCAGTCTGAGTTCTGTGCCCTCTGGAGCCCCTGAAGGAAGCCGTACACAGTCATCTTCCTCCCCCATGCCCCCTCCTCCTCCAGCCATCAGTTTGGGCACTAAGCTTGCCGGCTTCAGCAGCTCGGGCTGTATGAGCTCCGTGTCAGACTCTtactcctcctcttcttcatccaGAGAGGAATCCCGCCACGACAGGAGCCGCCATGGAGACAGCCACCATCGCCACAGCGACAGGGATCGGTATGGGGACCGGGATCGCTATGGCGATCGCGACAGGGACCGAGATCGTCACAGCGACAGCCGCAACGGCGATGGTGGTCGCCGGGAGAGGGACAGTTGGAGAGGAGAAAGGGAAGGCGGGGAAAGGGCAAGCTCACACAGAGGAGGTGAGGACAGCTTTGCTGTTCCGGATCCACCAAAACGGAAGAAGAGCAGGTGGGACAGTTAGAGCTAAACCCACAGGAGACATCGAAAGAGCAGGTCTGAGATCAGCCAGCCTTTTCAGCTGAGTCCATCTGGCCGCTGTTACTCAAATATCAACATATAAAGGGCACTGAAGACTTTGAAAGAGTTAAAGCTGCGTGTTCTCTTCAGTAGAATCCCTGTGAATTGTAGAGAAGCAGATCACAGATGTAGAACAGTCATGCAGGCCTTTCTCTGtaactatgtgtgtgtgaattcatCTTTCTGTCAACAAAGTCATGTTTTGGGGAGAGATTATTGGGGCTTTTTTTAGGGTGCAGAAATGACTTTGCTTCCTAGTGATACTTtgtgaattaaaaaagaaaagttgcaTTTCCAGGGTGAAgtaatttcaacatttttatGATTATAAATGAGAAATTATTCAAAGACTTTCAGTCATTGATATAATGATCCAAAGTATCTGTGAGTGATCTATTTTGTAGGTTTAAGTCTTTGTTCTGTATTTTAGTACATACTGTTACAAGCTTGGACAAATTTGTGCCATTACATAGTCCCCTTCTACCCTGTCtgtgattttgtattttaaaccaAAACTAAGTATGCTTATATACTAGTTTACCTTCAAACTCCTGGCTTCAGTTCGGTACCTGGCGCTAAAGAGAGTGAAGGTATCGAGTCTTGCGCTGCCAATGACTGCATTAAAAAcctataaaacaacaaaatctaCTAAGTGGGGTGGAGGCCTGGAATAAAATTTGTGctgtgtattcattttttttccccagtctaCTAGATTCTGAAGGCTTATCTAAGAGCACTGAACtattttcatgtatttcatCCATTTTGTGATCCTGGTGCAATTACATAAATCATACAATATCAACCTGGCTTGAATAAACGTGTTAAAACCTT

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242596 lncRNA upstream 52460 3853496 ~ 3882959 (+) True G204832
TU242626 lncRNA upstream 65676 3864913 ~ 3869743 (+) True G204860
XR_003402906.2 lncRNA upstream 67322 3856054 ~ 3868097 (+) True LOC113528035
XR_004579351.1 lncRNA upstream 69081 3856054 ~ 3866338 (+) False LOC113528035
TU242579 lncRNA upstream 148841 3776604 ~ 3786578 (+) True G204815
TU242706 lncRNA downstream 158398 4105943 ~ 4107728 (+) True G204912
TU242762 lncRNA downstream 244192 4191737 ~ 4192099 (+) True G204965
TU243084 lncRNA downstream 407994 4355539 ~ 4356186 (+) True G205242
TU243087 lncRNA downstream 408773 4356318 ~ 4356536 (+) True G205245
TU243092 lncRNA downstream 411860 4359405 ~ 4360374 (+) True G205250
XM_034310038.1 mRNA upstream 18564 3910205 ~ 3916855 (+) True rnf113a
XM_026916872.2 mRNA upstream 18564 3910209 ~ 3916855 (+) False rnf113a
XM_026916074.2 mRNA upstream 179235 3747501 ~ 3756184 (+) True LOC113527907
XM_026917083.2 mRNA upstream 192964 3737460 ~ 3742455 (+) True LOC113528497
XM_026916694.2 mRNA upstream 201534 3723763 ~ 3733885 (+) False slc16a6b
XM_034310237.1 mRNA downstream 1371 3948916 ~ 3950931 (+) True LOC113528362
XM_026916871.2 mRNA downstream 11512 3959057 ~ 3960638 (+) True LOC113528358
XM_026916875.2 mRNA downstream 19188 3966733 ~ 3983080 (+) False limd2
XM_026916864.2 mRNA downstream 43213 3990758 ~ 4019393 (+) True map3k3
XM_034310183.1 mRNA downstream 82264 4029809 ~ 4030450 (+) True LOC117598989
TU242330 other upstream 735286 3192712 ~ 3200133 (+) False LOC113527909
TU242114 other upstream 922560 3003672 ~ 3012859 (+) False pyya
XR_004579364.1 other upstream 1779570 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 2049941 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 2344344 1561594 ~ 1591075 (+) False syt3
TU242670 other downstream 19213 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 19213 3966758 ~ 3986284 (+) False limd2
TU242672 other downstream 19213 3966758 ~ 3986284 (+) False limd2
TU242673 other downstream 19213 3966758 ~ 3986284 (+) False limd2
trnae-cuc_26 other downstream 23634 3971179 ~ 3971250 (+) True trnae-cuc_26

Expression Profile