RNA id: XM_034310091.1


Basic Information

Item Value
RNA id XM_034310091.1
length 3961
RNA type mRNA
GC content 0.51
exon number 8
gene id znf281a
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5757144 ~ 5777225 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGGAGCGCAGCGGCCGCGGGAGAACAATGTTTAGACGCTGAAGACAGAAACAAACGACCGAGCTGGGAGgatCAGGATGGATTCAGAGCATATTCCAGGAAGACTGGGTGCAAGATGGAAGAACTGACCCCAGATGGGATGCCATCCCAGGATTTAGGATATCATCCGTTAGTGTGTACTACGTTCTAGCAGTATGAAGATGAGAGCGGCGGCCCTCTTTTGAAGACCCCGTCGTTTCAGCGTCATTCCGCTCTGTCCAAGCGCCTCCACCATGAGCCTCATTCAGGACAAGCTGGGAAGCGAGTTCCTGCGGCCGGGCGGGGGCATGGAGGCCGGCTTCAGTCCGGGCATGCTGATGTTCAGCCACCTGCCGCCCGTCACCAGCTTCACCCGCCTGACTGGACAGAGCGTCATGGCCGAGCTGCAGCCACACGAGCTCGTCCTGAAGAAGGAGCGCCACTCGCCCGACTGCGATGtctcaggaggaggaggaggactggTGTCCGGAGCAGGGATGATGCCAGGGACGGGCGAATACATGCCTGCTATGGGCATTAAGCAGGAGAAGGTGTCGGAGCTGGACTACAGGCAGCCCATGTATCCGAGCGACGGGGGGCGTGGTGGCACTGAGATGCTGGAGATGACCCTCAGCAACCATCAGAACCTGCTGGTACACGACCTCAGCATGGGGAACCTGTCGGGGAGGCTGGGAAAGGACTCCTCAGGGAGGAAAGGTCGAAGGTCAAATGGTGACGGACAGGAGGGCAAGACGCGACGGAAACGAGGAGAATCGAAGTCCGTGATGCTGGATCCTGATGGAGGGATGGTGTCACCCAGCTCTAAACCACACATCTGCGAGCACTGCAGCGCAGCCTTTCGCAGCTCCTACCATCTCCGCAGACACGTTCTCATACACACGGGTGAAAGGCCATTCCGGTGTAATCAGTGTAATATGAGCTTCATTCAGAAATACCTCCTGCAGAGACACGAGAAAATACACAGCGGAGAGAAGCCTTTTAGCTGTGACCAGTGCAACATGCGCTTCATTCAGAAATACCACATGGAGAGACATAAACGAACACACAGTGGAGAAAAGCCATACAAGTGTGACACCTGCCAACAGTATTTTTCCAGGACAGACCGGTTGTTGAAGCACAAGCGGACATGTGGAGACGGCATAAAGAAGGATTTGGACGGAGTAGAGATCGAGCTGGGCAGGGAGGCCCACGGCGGGCATGGCAGCTACGCAATCACTCAGGGAAACGTGACCACACCAGGCCGCAAACGAGGCAAGTCCAAAACTGGTGGCGAGGGTGGCAAACGCAAGAGGGCGTCAGGGCCCTCACACAGTCAGGGGACAGAGGGGTATGGCCTGCACGATTTTAACACTGTGGACAACCATGGACTCTCActatcatcatcaacatcagcatcccatccagggcCCAGCATGCACGGAGAACCTGTGCCAGCACCCAAAATGGCATTTAAAAAGGGCCACAGGAAAGCCTTGGAGAAAAACACCCAGTCCAAGCCTGGCAACATGGAGCTGACTGGCGACACAAGCATGGATGACATGGGCCTTCTCCAGGGCCACAAAGCAATCCAAAGTAGCAGCAACAACAGCGCCAACTATGATGATGCCATGCAGTTCCTGAAGAAGCGGCGCTACCTGCATGTGACCAGCAACGGCGGGATAGGGGGTGGAACTTCTGGCTATGATGTGGGTGTCAGCCACTTGCAGCCCCAGCCAGTTGTTGTTCAGGGCATCGTGTCTGGAGTAATGGATGGAGACTCCTCGTTGGGACTCCTCGACTCGTCGCCTCTGGCTGACATCAAGCCAGACAAGTCAGGAATCCCAGATGAAGTGCTACAAAGCCTGCTGGAGCACTATGGCCACAAGCCCGATGTGACCTTTGAGTTATCTGACCCACATCCTGTGGAACTGGAGCACGGCCCGGCCGAGGGTGTTGACCCAATGGGTGCCGAGAGCAACCCAGGGGGTGGAGACAAAACGTCCTTAATGCACGAGTACTCTCGCTTCCTTCTGCAGGCTCTTGAGAGGACAAGTCACAGTGGTGGCTTTGTACTTGGGCCGAcaccttcctcctcttcctcgtcCAGCGCCGTAGCTTCTTTCCCCACCTACACCACATCGCCTTTGGAGTTCTCCTTTGGCCTCccagcctcctcctcctctccaaCGCTCAATTCCTCTGTGCCAAAGCCACACTTTGTTGGCTTGTTGGGGAGCTCGTCGCCTTCGCAGGGCTTCCATCTGAGTGGCCTGGAGCCCACGGCACACTCCCAGCATTCCCAGCAGCAGCTCACCCCATCCCAGGAGCTGACGGAACAGCTGGAGAAACAACACACCAactctcctcctgctcctccacACACCCCTAACACAAGCGCCTACCAGCTCCCGGCTCCAACCACTGACCTTAGTGGCCAGAAAGATGGCCAAGGCCCCAAAAACGGCGCCACTGGCTTCTCAATGGCCCCGGCCAAAGGCTCGTATCAGATCGAGAATTTTGCTCAGGCGTTTGGGGGGCAGTTTAAAGGCGGGCGTAGGCCTTTGGTGTTCAGTACAGACTCGGGCGCAGACGTGGAGCAATTCTCAGGGTACAGCAGCCTTCTGGCCAGCGTGAGCAACACCAAAAGCCCACAAAGCCAAAGCTACAACTGATCCGGCTGCAGAGCTtctgctttttcattttgtcttttgtatcattgttgttattgttgttattattattataattattaattatttagttctattttattattatttttgtaatgcttttttgtgttttcttaatTACATCGTTGCcatttatgaaaatatgaaatttcACCCCCAGTTGGCCTGCGAGcccaaaatgaaatgcaaatttttaagtatttttgattaatttcctttttGGAAGGAAAGGCATATTTAGTAATTATTTTCCCTCTTTCGTAGTGTTGTAGAGACTGCTCTGTTCATCGATAGAACAACATCATGAAGCGAAAATAGCGTAGCAGTGAACtgtctgaagtttttttttttttttctctcttccctctctctacCCGATGATGATCATGTTTTAACAATGTAAGATAAATTTGAGGTAGAAATGGCAGGGAGTAGCCCGGAAAAGGAGAAGGGGGGGGAAACACCCAAAACATTGTCTGTTACAAGATTTAAAGTATTACTCAGGTAAATGTGTAAAGGTGTACAGGAGAATTTTATCAGAGGGGCAGCAATAATGCATTGAAGAGGTGGACACTTTGCAAATACAGAGAagctttcttttattctttttttttttggggttttattTTGAGTGTGACACATAATGAGATGAAACTGCTGCCTGCTCTGTTTCACTGACAACACTTTCCACTTAGCTGTATAGAGATTATGGTACTTTTATGTCAATGTGAAATGCTCACATTCTCTTTCAATAAGGgccatatatatttataagaatATCTATATGTACAATACCATATGTAACCGTTTTGGGGAATGGCAGGTGACATTGGGGTACACAGTAGGGGGGAAAAGGAGATGGGCCCGAGCATGCTCTTTCCTCTAACTCCTTTGCCAAATCCCCCACCCcagtttttcctctttcaccCTTGGAGAGCAGAGCCAAGGGTTGCTCACAAGAGGGCGCCGCGTGTACGTGCGCGAGTGCCTCTCAGCACACACCAGCTCATAGGACTATGCTGTGCCTCTTTCACCTCTGTCTTTTCCCCTCTTCTTCATCTCGAAAAAGAGTCCATTCGAGCACTTTGAACCTGTTCTTTTTTCATACAGGATGAATCGACCCAGTCTGATCAAGCAGGATGTCCATTCTGCAACAGTGGacattctatttttttaaaaaaaaaataaatctaaagtCAATGATTGGAAGACACGCAAGGGGAAAAGACCAGGAAAGGGTTTGCTTTAGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244141 lncRNA downstream 29464 5721634 ~ 5727680 (-) True G206210
TU244080 lncRNA downstream 125225 5631715 ~ 5631919 (-) True G206164
XR_003402932.2 lncRNA downstream 472239 5280730 ~ 5284905 (-) True LOC113528378
TU243538 lncRNA downstream 665222 5089336 ~ 5091922 (-) False G205633
XR_003402949.2 lncRNA upstream 175592 5952798 ~ 5953504 (-) True LOC113528476
XR_003402891.2 lncRNA upstream 410268 6187474 ~ 6189926 (-) True LOC113527891
TU244662 lncRNA upstream 426106 6203312 ~ 6204196 (-) True G206628
TU244696 lncRNA upstream 496610 6273816 ~ 6346363 (-) True G206649
TU244981 lncRNA upstream 868891 6646097 ~ 6647814 (-) False stat5a
XM_034309903.1 mRNA downstream 27121 5698087 ~ 5730023 (-) False si:ch211-198m17.1
XM_026916299.2 mRNA downstream 27122 5699015 ~ 5730022 (-) False si:ch211-198m17.1
XM_026916298.2 mRNA downstream 27122 5699015 ~ 5730022 (-) True si:ch211-198m17.1
XM_026916300.2 mRNA downstream 27124 5699015 ~ 5730020 (-) False si:ch211-198m17.1
XM_026916724.2 mRNA downstream 65872 5657837 ~ 5691272 (-) True mpp3a
XM_034309880.1 mRNA upstream 120354 5897560 ~ 5931876 (-) False svilc
XM_026916322.2 mRNA upstream 120354 5897560 ~ 5931218 (-) False svilc
XM_026916319.2 mRNA upstream 120354 5897560 ~ 5931218 (-) False svilc
XM_026916321.2 mRNA upstream 120354 5897560 ~ 5931218 (-) False svilc
XM_026916320.2 mRNA upstream 120354 5897560 ~ 5931218 (-) False svilc
TU244177 other downstream 411 5754767 ~ 5756733 (-) True G206236
TU243535 other downstream 665222 5089336 ~ 5091922 (-) False G205633
XR_004579368.1 other downstream 1022258 4722417 ~ 4734886 (-) False mlx
TU243400 other downstream 1022339 4728094 ~ 4734805 (-) False mlx
XR_004579349.1 other downstream 1639501 4092913 ~ 4117643 (-) False dcaf7
TU244224 other upstream 63931 5841137 ~ 5841477 (-) True G206282
XR_004579400.1 other upstream 163656 5940862 ~ 5950997 (-) False retsat
XR_004579347.1 other upstream 176527 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other upstream 176527 5953733 ~ 5961050 (-) True LOC113528542
TU244626 other upstream 349704 6126910 ~ 6194996 (-) True G206604

Expression Profile