RNA id: XM_034310097.1


Basic Information

Item Value
RNA id XM_034310097.1
length 1025
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC117598847
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 170845 ~ 171952 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGTTCCATCAATTCCATGTTCCTCCTGATGAAAGAAACTACTTGAGACTTTTATGGTGGGAGAAGGGAGACTTGGAAGGAGAACCCCAAGAATATAGAATGACGGTACACCTTTTTGGCACTGCTTCATCACCTGGGTGCGCCAACTTTGGTCTTAAATATCTAGCAGAGAAGTACAAGTCTGAGTATCCCATAGCTTCATCTTTCGTGAAGAAGAATTTTTGTGTTGATGATGGTTTGATTTCAGTTCCATCGATTCAGAAAGCGAAGGAGTTAATTGTTGAAGCTCAAACCTTGTGCAAGCATGGAGGGTTACGCCTTCATAAGTTTAACTCAAATAAGAAAGAAGTTCTACACTGTGTGGATTCTTCAGAGTGCGCAGTAACTACCATACCGTTTCACCTGAGTCCTGAAGTAACAGGATATGTTCTTGGCATTCAGTGGTCTACGAAAGATGACACATTCAGTTTTGACATCAAACTGAAAGATCAGCCTTCAACACGTCGAGGAAATGTGTCGTAGAAATATTGGATGGGATGATTTAGCTTTCAGCTTTAGTTTCCCTTCGGCAAGCAGAGCGAGGTTGGTTTCACATATTTCTTTGGTACAgtattgttgattaatttgaatgttaaatgtttagTTAATATGGTGGATGTTTGTTATTGTAAATGTTGgttgtttacttttttgtttgtttctttctttttgttgttttgtagtTTTACGGTGCCATGGTGCTGTGATCTAATTGTTATGGTGCTATGAAGTCAATCAATGGTCGTGATGCATGGAGAGAATTTGCAACAAAGAATTGAGACAACGAATACTTCAGTATTGAAGTTTATTGCATCTGAGTAAATAAAACGAATGCACCCGTCAAAGCTCTCTGCTTTATTTGTTCGACGCTGAAGGGCTGCTACAAGCCAGCTGTGTACTATCCTACAACAGCTACTAACCAGAGAAGGTAAAAGCTAACATGTGCctcaagacacatgaagctaaCCAACCTGTGCATTTTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240368 lncRNA upstream 11912 158552 ~ 158933 (+) True G203049
TU240359 lncRNA upstream 24128 144076 ~ 146717 (+) True G203043
TU240360 lncRNA upstream 24292 144076 ~ 146553 (+) False G203043
TU240279 lncRNA upstream 119770 38437 ~ 51075 (+) True G202982
TU240381 lncRNA downstream 3481 175433 ~ 175991 (+) True G203058
TU240383 lncRNA downstream 3481 175433 ~ 175991 (+) False G203058
TU240438 lncRNA downstream 29998 201950 ~ 202805 (+) False G203081
TU240439 lncRNA downstream 29998 201950 ~ 202805 (+) False G203081
TU240466 lncRNA downstream 87239 259191 ~ 307393 (+) True G203108
XM_026911782.2 mRNA upstream 107439 55561 ~ 63406 (+) True syt5a
XM_026911773.2 mRNA upstream 165063 2041 ~ 5782 (+) True LOC113525294
XM_034310145.1 mRNA downstream 94928 266880 ~ 269916 (+) False prl
XM_026911433.2 mRNA downstream 109260 281212 ~ 286434 (+) True LOC113525016
XM_034309955.1 mRNA downstream 109508 281460 ~ 286434 (+) False LOC113525016
XM_034309959.1 mRNA downstream 125719 297671 ~ 332191 (+) True ap2a1
XM_034309960.1 mRNA downstream 125720 297672 ~ 332191 (+) False ap2a1
TU240365 other upstream 7709 156620 ~ 163136 (+) True G203047
TU240364 other upstream 9733 155327 ~ 161112 (+) True G203046
TU240433 other downstream 27308 199260 ~ 341276 (+) True G203077
TU240437 other downstream 29998 201950 ~ 202805 (+) True G203081
TU240434 other downstream 95627 267579 ~ 269820 (+) False prl
TU240520 other downstream 352860 524812 ~ 527620 (+) False LOC117598976
TU240776 other downstream 500272 672224 ~ 676839 (+) False thoc6

Expression Profile