RNA id: XM_034310124.1


Basic Information

Item Value
RNA id XM_034310124.1
length 2790
RNA type mRNA
GC content 0.50
exon number 17
gene id gys1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6899007 ~ 6916995 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAACCGGACGTGTGTTGATGTGCATGCCACTGGCACGCAGTATCTCAGTGACCTCCCTGTCGGGTCTGGAGGAATGGGACGAGGAGTTCGATTTGGAGGATGCAGTTCTGTTTGAAATCGCATGGGAGGTGGCTAATAAAGTTGGAGGCATCTACACAGTGATCCAGACGAAGGCACGTTTGACCTGTGAGGAATGGGGTGAAAACTACTTCTTGGTGGGGCCCTATACAGAGTCTAATGTCAGGACCCAGGTTGAATTGATTGAGCCCCCAAACGCAGCACTGAGGAGGACCATCGACAAGATGAACAGCAGTGGCtgcaaggtGTATTTTGGGCGTTGGCTGATTGAAGGCTCTCCGTATGTGATCCTGCTGGATGTTGGTTTCACCGCCTGGTCTCTGGACCGCTGGAAGAGTGAATTATGGGAAAACTGTTCCATCGGCGTGCCCTGGTTCGACCGCGAGGCCAACGACGCTGTCCTGTTCGGCTTCCTCACCGCCTGGTTGCTCGGAgagtatgcAGCGCAGTGTGAAGATCCTCCACACATCCTGGCTCATTTTCATGAGTGGCTGGCTGGACTGGGGCTGGTACTATGCCGACAGAGGCACTTGCCTGTAGCGACCATTTTCACCACACACGCCACGCTGCTCGGCCGATACCTGTGTGCCGGGAACGTCGACTTCTACAACAACCtggcagagTTTAATGTTGATAAGGAAGCAGGGGATAGACAGATCTATCACCGCTACTGTTTAGAGCGGGCCGCAGCACGCTGTGCTCACGTCTTCACCACTGTGTCTAAGATCACAGCCATCGAGGCTGAACACTTGCTCAAAAGGAAACCAGATATTGTGACTCCTAATGGTCTGAATGTGAAAAAGTTCTCAGCCATGCATGAGTTTCAGAATCTCCACGCTCAGAGCAAAGCTCGCATTCAAGAGTTCATCAGAGGCCATTTCTATGGGCATTTAGATTTTAATCTGGATAAAACCGTGTTTCTGTTCATTGCTGGACGCTACGAGTTTTCAAATAAAGGAGCTGACATTTTCCTCGAAGCACTTGCCAGACTCAACTATTTACTGAGGGTGAACCACAGTCAGGTTACGGTGATAGCGTTCTTCATCATGCCTGCTCGCACCAACAACTTCAACGTGGAGACGCTGAAGGGTCAAGCCGTACGGAAACAGCTCTGGGATACGGCTCAGACTGTGAAAGAACGCTTCGGGAAGAAACTCTACGAATCGCTGCTAGTcGGGCAGCTCCCAGAGGTGTCGAAGATGTTGGACAAAGAGGATTTCACCATGATGAAGAGGGCCATCTTTGCTACACAGCGCCAGTGTCTTCCTCCCATCTGCACCCACAACATGCTGGAGGACAGCACGGACCCCATCCTCACCGCCATCCGCCGCATCGGCCTCTTCAACAGCGCTCAGGATCGCGTCAAGGTCATCTTCCATCCAGAGTTTCTGTCCTCCACCTCCCCGCTGCTGCCCATGGACTACGAGGAGTTTGTTAGAGGCTGCCATCTTGGAGTCTTTCCTTCCTACTACGAACCCTGGGGCTACACACCAGcggAGTGCACTGTGATGGGCATTCCCTCCGTCTCCACTAATCTCTCTGGGTTTGGCTGTTTCATGGAGGAGCACATAGCTGACCCGTCTTCTTATGgGATTTATATTCTGGACCGGCGGTTTCGCAGCGTGGACGAATCATGCAACCAGCTGACCTCCTTCCTGTTCCAGTTCTGCCAGCAGAGCCGCAGACAGCGCATCATCCAGAGGAACCGCACAGAACGCCTCAGTGACCTGCTGGACTGGAGATATCTGGGCCGGTATTACGTGGCTGCTCGCCATATGGCTCTGGCCAAAGCCTTCCCTGAGAGTTACGTGTACGAGCCCCACGATCCAACCTCGACTACGGGTTTCCGTTACCCCCGTCCTGCCTCGGTGCCACCCTCGCCTGCTCACTCGCTCCATTCGTCCCCACACCACAGCGAGGCTGAAGACGAGGACGAGACATATGACGAAGATCTGGAGGCTGAGAAAGACCGCCTGAACATCCGGCAACCTTACAGTCTGCCAAACAAGAATAAAAGCCTGCCAGTTGACCTACCTGAGAAAAactaacactacacacactcacacgtgcactcacacacacacacacacacacacacacacacacacactgttgacCTGTTCATTGCCTGTTGGTTATTTCTGGGGTTTGAAAAgtaaactgtatttatttcagGAAACTATACTGTTCACATGAGGAgctactgtattttatttcaaaaatagGTGAATTGATGTCTTCCGCACTTACTAGTAGACTCAGATTGCTCAAGATATGTTCAGATCTTTTTATTCGAGACTAGGGGATGCCGCTTCAGTGAGAAGTTGAATAGAAATGGTAGCCAGTTGCTGTGTGAGTAACATCAGTCTCTTCTGTCCTATAGTATTATACCTCTAAAGAGCCAGTGAAGCTGAAAATACTCTTTTTACCAAAAAACAGTGGGATTGTAATACAAGGCAAGGCATTTTACCACAAACCAGCATCAGAGAAAAACGGAGCTAGGACAATCTTCAGTATCACTGGATCCGTCTGATcttttttattccattattGTTCTCGAGCCTTGTCCCAGTTTTATGGTAGTCAAGGCACAGCAGAGGTAGAAAACTGTTCTCTGTTTTTGACAATAGTTTCATATAAACTTCAGATAATATAAACTCAGATGATATAAGCGTTGCCTTGGTGTGAGAATAAATCTGTATTTCTCTGA

Function

GO:

id name namespace
GO:0005978 glycogen biosynthetic process biological_process
GO:0004373 glycogen (starch) synthase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245005 lncRNA downstream 70861 6826368 ~ 6828146 (-) True G206923
TU245006 lncRNA downstream 73247 6824896 ~ 6825760 (-) True G206924
TU244981 lncRNA downstream 251193 6646097 ~ 6647814 (-) False stat5a
TU244696 lncRNA downstream 552644 6273816 ~ 6346363 (-) True G206649
TU244662 lncRNA downstream 694811 6203312 ~ 6204196 (-) True G206628
TU245188 lncRNA upstream 185436 7102248 ~ 7102389 (-) True G207057
TU245372 lncRNA upstream 259720 7176532 ~ 7176755 (-) True G207198
TU245396 lncRNA upstream 310573 7227385 ~ 7227664 (-) True G207221
TU245401 lncRNA upstream 320861 7237673 ~ 7237881 (-) True G207226
TU245403 lncRNA upstream 323429 7240241 ~ 7240907 (-) True G207227
XM_026916996.2 mRNA downstream 8084 6888662 ~ 6890923 (-) True tmem86b
XM_026916777.2 mRNA downstream 38100 6846895 ~ 6860907 (-) True stk17al
XM_034309886.1 mRNA downstream 78638 6794354 ~ 6820369 (-) False atp6v0a1a
XM_034309885.1 mRNA downstream 78638 6794354 ~ 6820369 (-) True atp6v0a1a
XM_026916325.2 mRNA downstream 105472 6773433 ~ 6793535 (-) True cavin1a
XM_034310098.1 mRNA upstream 20742 6937554 ~ 6944028 (-) True zgc:55558
XM_026917020.2 mRNA upstream 37301 6954113 ~ 6978133 (-) True slc17a7a
XM_026917093.2 mRNA upstream 63728 6980540 ~ 7002180 (-) True slc6a16a
XM_034310252.1 mRNA upstream 63728 6980540 ~ 7001920 (-) False slc6a16a
XM_034310251.1 mRNA upstream 63728 6980540 ~ 7001863 (-) False slc6a16a
TU244626 other downstream 704011 6126910 ~ 6194996 (-) True G206604
XR_004579347.1 other downstream 937957 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other downstream 937957 5953733 ~ 5961050 (-) True LOC113528542
XR_004579400.1 other downstream 948010 5940862 ~ 5950997 (-) False retsat
TU244224 other downstream 1057530 5841137 ~ 5841477 (-) True G206282
trnac-gca_16 other upstream 354094 7270906 ~ 7270977 (-) True trnac-gca_16
trnac-gca_17 other upstream 355443 7272255 ~ 7272326 (-) True trnac-gca_17
trnac-gca_19 other upstream 356245 7273057 ~ 7273128 (-) True trnac-gca_19
trnac-gca_20 other upstream 357494 7274306 ~ 7274377 (-) True trnac-gca_20
TU245410 other upstream 401791 7318603 ~ 7321962 (-) True G207231

Expression Profile