RNA id: XM_034310129.1


Basic Information

Item Value
RNA id XM_034310129.1
length 2804
RNA type mRNA
GC content 0.55
exon number 21
gene id sgsm3
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 26121034 ~ 26145128 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACGGTGATTTATCGCTGTTTAGACACTCTGATTtgaaaacatgtaaaatataaacgATTAAAAAGCGAAATTCTGGAATATCGTGCTGTTTGTTCGTCTCGTGTCGCTCCGCGGCCGGCTGTGGAACTACTTTCCGCGCGGAGGAACACGGCAGCGCGCGCAGCAGGTGAACAGGCCCGTGACGCAACACAGCCAGAGCCGCACTCCGAGCTACAGCTAGCGCGTTAGCATCCGCGGCTAACAAACACCTCCACTGAGCGCCGCATTAACACtaacagcaggtgtgtgtgcaggtgtgtgcgCGCGCCGTTCAGTCATGGTGTAAAAGAGTTTTGTGAACCTCACTCTGGATCTGgatctcctgtctctctcccactccTCCACCATGTCAGGTAGTTACACTCCGGCCCCCGGAGGTCCGTTCTCCGCTCTCACGCCCAGCATGTGGCCTCAGGACATCCTCGCCAAACACCATCAGaaagaacaaaatCTGGAATCAGAGCCTCAGTACGACGAGTTCGGCTTCCGGATCGACAGCGAAGacggGGTGGAGGCACGTGATTGGCTGCGGGGTGATGGAGCTCCACAGAGAGAAGACCCCCAGCAGAGACTGCGCTGGCAGGCCCACCTGGAGttcacacacaaccacacagtGGGAGATCTCACCTGGGACCTGATCTCTCCCATCCTGCCCCGCTCCGATCGCCTCCGCTCGCTCGTGCTGGCCGGAATACCGCACAGTATGAGacctcagTTATGGATGCGTCTGTCAGGAGCTCTGCAGAAGAAGAGGACTTCTGACATTTCTTACAGAGAGATCATCAAAAACAGCTCAAACGATGATACTACAGCAGCcaaacagATAGAGAAGGATCTTCTGCGCACCATGCCCACTAACGCGTGTTTCAGTACTCTGAGCAGTGTTGGAGTTCCGCGCCTCAGGCGGGTTCTCAGAGGTCTGGCCTGGCTCTACCCCGACATCGGCTACTGTCAAGGCACCGGCATGgtggTGTCGTGTTTGCTGCTGTTCCTGGAGGAAGAAGACGCTCTGTGGATGATGTGTGCTTTAATCGAGGACCTGCTGCCTCCATCTTACTTCTCCTCCACGCTGCTGGGGGTTCAGACGGACCAGCGCGTCCTGCGCCAGCTCATCGTCCAGTACCTGCCCCGTCTGGACCGCCTGCTGCAGGAGCacgacatcGAACTTTCCCTCATCACACTGCACTGGTTCCTCACCTCGTTTGCCAGTGTGGTGGATATCCGGGTTCTGCTCCGGATCTGGGATCTGCTCTTCTACGAGGGTTCTATCGTGCTTTTCCAGGTGACACTGGGCATGCTGAAGATCAAGGAGGATGAGCTGGTGTCATCGGAGAACTCGGCGTCCATCTTTAACACGCTGTCGGACCTGCCGAGTCAGCTGGAGGACGGCGCGGTGGTGCTCGGGGAGGCGGTGAGACTGGCAGGGTCGCTCTCTCAGGACACGCTGGACGCTCAGAGACACAAACACCTGGCGTATATCCTGGCTGAACAGACACAGCTCAACTCcaacaactcacacacactcaacaccagCCTCAAcaaggtGGTTCGGAGACAGAGTCTGCGCAGGAAGTCCACGCTGAGCTCACTGCTGTTCGGAGAGGACGAGGCCGAGGCGCTCAAGGCCAAAAACATCAAACAGACCGAGCTGGTGGCGGCGCTGAGGGAAGCGATCACTCGCACCGCAGAGCACTTCCACTGCCTCGACCCGGACCACTGCACCACGGACCTGACTCCAGACTACTCCATGGAGAGTCATCAGCGGGACCATGAGAACTTCCTGGTGGTGTCTCGGAATCGCAGGAGGCGGGCTAAAGCGCTGCTGGATTTTGAGCGCCATGACGACGACGAACTGGGTTTcagaaaaaatgacatcatcacaATCGTCTCTCAGAAGGACGAGCACTGCTGGGTGGGAGAGCTGAACGGCCTGAGGGGTTGGTTTCCTGCAAAATTCGTGGAGATCCTGGATGAACGGAGTAAAgagtattcTCTGGCAGGTGATGACTCTGTAACGGAGGCTGTAACTGATTTGGTTCGGGGAACACTGTGTCCTGCTCTGAAGGCCATTTTTCAGCACGGTCTGAAGAAGCCCTCTATACTGGGTGGGCCCTGCCACCCCTGGCTCTTCATCGAGGAGGCAGCGAGCCGGGAGGTGGAGAGAGACTTTAACTCTGTTTACTCCAGACTGGTGCTGTGTAAGACCTACAGGTTAGATGAAGATGGGAAAGTTCTCACTCCTGAGGAGCTGCTGTACAGAGCTGTACAGAGTGTTAATATGAGTCACGACTCTGCACACGCTCAGATGGACGTCAAGTTCCGCTCACTCGTCTGTGTGGGACTGAAtgagcaGGTTCTGCACTTGTGGTTGGAGGTTCTCTGCTCCAGTATCACAGCAGTAGAGAAGTGGTATCAGCCGTGGTCCTTCCTGCGCAGTCCTGGCTGGGTGCAGATCAAGTGTGAGCTccgagtTTTGTCCAAGTTTTCCTTCAGTCTCTCACAGGACTGTGAACTTCCTGCCAAAAGAGAGGAAAAGGAGCAGAGACCCCTGAAGGAGGGCGTTCAGGACATGTTGGTCAAACATCACCTCTTCAGCTGGGACATCGATGGATagataaacactacacacacactacacactctcacacactctcacacactctctcacacacacacacacacacacacacacacacacacacacacacacacacaatcgcTTCCTTAAATACCAAAAGTGAAATGTAAACAGCTTTATATAACA

Function

GO:      GO:0005097,GO:0032313

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402457.2 lncRNA upstream 34221 26080154 ~ 26086876 (+) True LOC113523785
TU257228 lncRNA upstream 48417 26067748 ~ 26072680 (+) True G217175
TU257115 lncRNA upstream 219608 25900074 ~ 25901489 (+) True G217082
TU257061 lncRNA upstream 230650 25796304 ~ 25890447 (+) True G217035
TU256812 lncRNA upstream 725214 25395622 ~ 25395883 (+) True G216817
TU257268 lncRNA downstream 54137 26199265 ~ 26205038 (+) True G217193
TU257286 lncRNA downstream 98581 26243709 ~ 26247946 (+) True G217211
TU257259 lncRNA downstream 112243 26257371 ~ 26301906 (+) True LOC113523791
TU257266 lncRNA downstream 112243 26257371 ~ 26301906 (+) False LOC113523791
TU257257 lncRNA downstream 125759 26270887 ~ 26301906 (+) False LOC113523791
XM_034309889.1 mRNA upstream 3038 26087441 ~ 26118059 (+) True gtpbp1
XM_034309891.1 mRNA upstream 3038 26087444 ~ 26118059 (+) False gtpbp1
XM_034309890.1 mRNA upstream 3038 26088077 ~ 26118059 (+) False gtpbp1
XM_034309892.1 mRNA upstream 3038 26088077 ~ 26118059 (+) False gtpbp1
XM_026909845.2 mRNA upstream 88835 26028298 ~ 26032262 (+) True LOC113523788
XM_034309823.1 mRNA downstream 139416 26284544 ~ 26296646 (+) False LOC113523791
XM_034309804.1 mRNA downstream 160318 26305446 ~ 26306768 (+) False ier2a
XM_034310106.1 mRNA downstream 165056 26310184 ~ 26321753 (+) False gtf2f1
XM_034310107.1 mRNA downstream 165344 26310472 ~ 26321753 (+) True gtf2f1
XM_034310278.1 mRNA downstream 186605 26331733 ~ 26434252 (+) True cacna1aa
trnai-uau_8 other upstream 765505 25355500 ~ 25355592 (+) True trnai-uau_8
trnai-uau_7 other upstream 766229 25354776 ~ 25354868 (+) True trnai-uau_7
TU256462 other upstream 1323419 24797254 ~ 24797678 (+) True G216515
TU256141 other upstream 1582055 24529679 ~ 24539042 (+) False si:ch211-157c3.4
TU256100 other upstream 1663093 24457070 ~ 24458004 (+) False G216197
TU257298 other downstream 160319 26305447 ~ 26306767 (+) True ier2a

Expression Profile