RNA id: XM_034310167.1


Basic Information

Item Value
RNA id XM_034310167.1
length 2093
RNA type mRNA
GC content 0.43
exon number 10
gene id prpsap1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14379035 ~ 14391094 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATCGCAACATAAAcctggggttaaaaaaaaaaaaaagaagaaaaataaacgcTTGGTTGTTTGGAAACAGAAAACCGCAGGATGTGGACGCTGGAACAGGGCTCTTGTGATTTTAAGGCTGTGTTGGTTATCAGTCCTGTTCTGGTGTTATTGTGAAGTTTTAATGACACGCTGATACTGGCTTCGTCACATTCAGCACTCAACcgaaaaaattaataaaaataacagaagaTAAAAAGCATATTCTGCCAAACCTGACGGAATAGCAGTCCAAAGTTGAACTAGTACTTTTCTTCGTTTACTTTTCGTCAAAATGAACGTGCCGAAAAGCGGTTATCGCGTTTTCTCTGCTAACTCCACTGCGGCATGCACAGAGCTTGCCAAGAAGATTACTGAgcGTCTTGGCGTGGAGTTGGGAAAATCTGTTGTTTACCAGGAGGCGAACAGAGAGACTAGAGTTGATGTCAAAGAGTCTGTTCGAGGCCAAACAATCTTTATTATCCAGACCATTCCCAGagATGTTAACACAGCAATCATGGAGCTGCTAGTCATGGCATATGCACTCAAGACCTCCTGCGCCAAAAACATTATTGGAGTCATCCCTTATTTTCCGTATAGCAAACAGTGCAAGATGAGGAAGAGAGGATCTATAGTGTGTAAACTGTTGGCGTCCATGCTTGCCAAAGCAGGTTTGACACACATCATCACTATGGACCTGCATCAGAAGGAGATCCAGGGTTTCTTCAGTTTCCCTGTGGATAACCTGCGTGCTTCTCCATTCCTTCTGCAGTACATTCAAGAAGAGGTCCCTGATTACAGAAATGCCATTATTGTTGCAAAGTCTCCATCTGCTGCAAAAAGGGCTCAGTCATATGCGGAGCGGCTGCGTCTGGGCCTGGCTGTTATTCATGGGGAGGCTCAGTGTTCTGAATCGGACATGGCGGACGGACGACACTCTCCTCCTTGCGTGCGCAACACTACAGGCCACCCAGGCCTCGAGCTGCCATTAATGATGGCCAAGGAGAAACCACCCATTACAGTGGTGGGAGATGTTGGAGGACGCATCGCCATCATTGTTGATGACATCATTGATGATGTGGAAGACTTTGTGGCATCAGCAGAGATCCTGAAGGAGAGAGGAGCCTATAAGATCTACATTATGGCCACCCATGGCCTGCTGTCAGCCGATGCACCACGTCTCATTGAGGAATCTGCCATAGACGAGgtagTGGTGACGAACACCGTCCCACATGAGGTGCAGAAGCTGCAATGCCCGAAGATCAAGACGGTGGATGTGAGCATGATACTGGCCGAGGCCATCCGTCGCATCCACAACGGCGAGTCCATGGCCTACCTGTTCCGCAACATCACTGTAGATGATTAGGCTTAGCTTTGACCTCACTGTGGAAGGGAACTCTTTACAAAGGATAGAGGAGGTGAAGAGGAATTGAGGAGAAAGTCCTCTTCTGCATGTGCTAGGAGTGCCAGGTTttctaaaaattattatttaaaccaATAATATTAgcttatttaaatttataataataaactatgcTGTTTGAGGCCAggttaaatacaaatttaagtTAAATTTTAGGAACTGACAGTATGAAGGCAGTCTCTTTTACATTTCTGCACTACTATAAGCTATATAGCTCTAAAAGGCTGCAACAGTACCTGAGACATATGCAAGAAACTTGAATGTTGTTCTGTTGCTTGCTGAAGTAGTCTGCCAAATAAAGGCATTTGGTCAAAATTGGTTTGCTTACACTAAATTTATAGTTTGTGATTATTAAAATTGTCCAATATTAGTGCTTGAGCCAATATGCCCTAAAACTGTAGAGCTATCGATAAGCATTATGCTGATTTGTGTATTAAGAGTGGTTAGCTCTTCATTACAAAAATTTAAGGAAAAAACTTGCACGTCTTTGCGTCCAAGCCATGTGGTTTCTGTGTCCTCTCGTTGTTGTGCCCCTATACTTTGTGTCTTGTGTACTGGGATGGAGCCCTTTTCAGACTTTACCAACGTTATGTTAGTTTGTATTaagaagcagcctttattttgtctcatatacattacagcacggtgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249962 lncRNA downstream 49115 14329586 ~ 14329920 (-) True G211003
TU249956 lncRNA downstream 80837 14294307 ~ 14298198 (-) True G210997
TU249932 lncRNA downstream 162163 14216673 ~ 14216872 (-) True G210973
TU249911 lncRNA downstream 243731 14135094 ~ 14135304 (-) True G210952
TU249888 lncRNA downstream 378027 13993996 ~ 14001008 (-) False mcrip1
TU250024 lncRNA upstream 70703 14461792 ~ 14462409 (-) True G211054
TU250187 lncRNA upstream 197731 14588820 ~ 14594664 (-) True G211187
TU250196 lncRNA upstream 228143 14619232 ~ 14621782 (-) False G211195
TU250195 lncRNA upstream 228685 14619774 ~ 14621782 (-) True G211195
TU250303 lncRNA upstream 436146 14827235 ~ 14844312 (-) True G211269
XM_026917236.2 mRNA downstream 176477 14183537 ~ 14202558 (-) True LOC113528592
XM_026917110.2 mRNA downstream 349394 14017615 ~ 14029641 (-) False pecam1
XM_026917109.2 mRNA downstream 349394 14017615 ~ 14029641 (-) True pecam1
XM_026916932.2 mRNA downstream 372523 14004169 ~ 14006512 (-) True LOC113528401
XM_026915988.2 mRNA downstream 378001 13993876 ~ 14001034 (-) True mcrip1
XM_034310310.1 mRNA upstream 3140 14394229 ~ 14410677 (-) False LOC113527937
XM_034310309.1 mRNA upstream 3140 14394229 ~ 14410677 (-) False LOC113527937
XM_034310306.1 mRNA upstream 3140 14394229 ~ 14410677 (-) True LOC113527937
XM_034310307.1 mRNA upstream 3140 14394229 ~ 14410676 (-) False LOC113527937
XM_034310308.1 mRNA upstream 3140 14394229 ~ 14410675 (-) False LOC113527937
XR_003402952.2 other downstream 349394 14020248 ~ 14029641 (-) False pecam1
XR_003402937.2 other downstream 372523 14004169 ~ 14006512 (-) False LOC113528401
XR_004579330.1 other downstream 979810 13395466 ~ 13399225 (-) True LOC117598755
trnas-aga_12 other downstream 1552496 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579427.1 other downstream 1819822 12549120 ~ 12559213 (-) False tom1
XR_004579449.1 other upstream 96732 14487821 ~ 14490775 (-) True LOC117599009
TU250141 other upstream 129188 14520277 ~ 14520975 (-) True G211151
XR_004579411.1 other upstream 287661 14678750 ~ 14690132 (-) False LOC113528445
XR_003402969.1 other upstream 1080688 15471777 ~ 15471912 (-) True LOC113528654
XR_004579443.1 other upstream 2901762 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile