RNA id: XM_034310169.1


Basic Information

Item Value
RNA id XM_034310169.1
length 1834
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC113528065
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2363124 ~ 2375676 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCATAGAAAAAAGACCATCAACCGCGACGCTTCATCAGTTCATGAGTTTCAACCACATGCTCATGAACTTCATGAGATTCATCGTGAGAAGACAGTAGCAGTGGACACTATAATTAACACCAAGATGAACGACGCCTCAAAGACCAGGATGCTGAGACTTTGTCTTAATTTAATTCTCGTCTGTGTTCTTAGAGCTTCTCTGCTGGCTGATGGCGCTAACATACGACTTGCTGGTGGCAATCACTCCTGCTCTGGTAGAGTGGAAGTGTATTATAATAACCAGTGGGGAACTGTGTGTGATGACGACTGGGACATGAATGATGCGCAGGTGGTGTGTAGACAGCTTGGATGTGGTAATGCTGTCAGTGCACCTCAAAGTGCCCACTTTGGTCAGGGAAGTGGCCCAATACGGCTGGATGATGTTCAGTGTTCTGGAAGTGAGAGCGCCATCACACAGTGCTCTCATAATGGATTTGGAAACCACAACTGTGGCCATGGTGAAGATGCTGGTGTTACTTGCTCAGGCCATAATGCGATCAGGCTGGTGAATGGTGTGAGTAACTGTTGTGGTCGAGTGGAGATCCAGCACAATGGCCgttggggaacagtgtgtgatgattactGGGACTTAAAGGATGCAGAGGTGGTGTGTAGACAGCTTGGATGTGGTAAAGCCGTCAGCGCTCCTCATAATGCCCACTTTGGTGAGGGAAGTGAACCAACCTGGCTGGATAATGTTCAGTGTACTGGAACTGAGAGCTCCATAGATCAGTGCTCACACACAGGATTTGGAGTAGAGTACTGTGGACAtggtgaagatgctggagtcatctgctcAAaCCTGCAGACTCCCACATTGACTCGGATCTCTCCAAACTCTGTGATCTCACCTGGAGAAGTCCTTCAGTTCAGATGTACCACACCCAGTCCAACATGCATCTCTGTGGACTTCACTTTGTATAAAAACGGTACTTCAATAAAGAATCAAACTGCAGAGTCTACAACAACATTTAATCTGACTGTAGATGCCTCACATCAGGGCCAGTACACCTGTGACTACTCATACAGGGAAAGTAACTCCACATCATCCAGGAGCAACTCCATTACCATCACTGTGGATGGCGCTAACATACGACTTGCTGGTGGCAATCACTCCTGCTCTGGTAGAGTGGAAGTCTATTATAATAaccagtggggaacagtgtgtgatgacagTTGGGACATGAATGATGCTCAGGTGGTGTGTAGACAGCTTGGATGTGGTAATGCTCTCAGCGCACCTCAAAGTGCCCACTTTGGTCAGGGAAGTGGCCCAATATGGCTGGATGATGTTCAGTGTTCTGGAAGTGAAAGCGCCATCACACAGTGCTCTCATAATGGATTTGGAAACCACAACTGTGACCATAGTGAAGATGCTGGTGTTACTTGCTCAGCATCTCTGGCTCCCTACATTGGTGTGGGAGTGACAGCAGGACTGCTTCTCATATTAGTTCCAGTCATCATTTGGTTTGTGAAGACACAAAAAAGACGTCAAAGACAATGTCAGATGGACAGGAAGAAGGATACACAGTGTGCCAGAAACACATGTGACAGTCCCCaaggagagactgagacagatgATGAAGCCGATTATGAAAACAGCAAAACTATTTTCCCGCAGAAGGACGATTCAAACAACTCTGATAACGACTACATTATTGTTGATGCTCAAGAACAAAGAAGTGATGTGGACAATGACAAAGAGGATGTAGAAATTTATGCAAACTGTGTAGAGTAGTGCTGAGAACTAAACAATTATCCAATATCTACAGTCCACAAACAATAACATGgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241938 lncRNA downstream 20351 2331676 ~ 2342773 (-) False LOC113528223
TU241929 lncRNA downstream 97911 2264843 ~ 2265213 (-) True G204269
TU241924 lncRNA downstream 102750 2258504 ~ 2260374 (-) True G204264
TU241846 lncRNA downstream 148526 2213117 ~ 2214598 (-) True G204191
TU241841 lncRNA downstream 150681 2210785 ~ 2212443 (-) True G204187
XR_004579375.1 lncRNA upstream 38643 2414319 ~ 2415310 (-) False LOC117598835
TU241959 lncRNA upstream 38791 2414467 ~ 2415527 (-) True LOC117598835
TU241970 lncRNA upstream 57552 2433228 ~ 2434080 (-) False LOC113528062
XR_004579377.1 lncRNA upstream 120936 2496612 ~ 2502195 (-) True LOC117598837
TU241989 lncRNA upstream 165450 2541126 ~ 2541525 (-) True G204317
XM_034310168.1 mRNA downstream 18212 2338877 ~ 2344912 (-) True LOC113528223
XM_026916342.2 mRNA downstream 39478 2305276 ~ 2323646 (-) True LOC113528064
XM_034310165.1 mRNA downstream 58675 2289417 ~ 2304449 (-) True LOC117598982
XM_034310005.1 mRNA downstream 79821 2269671 ~ 2283303 (-) True LOC113528224
XM_034309965.1 mRNA downstream 129829 2225611 ~ 2233295 (-) True aoc2
XM_034310004.1 mRNA upstream 16487 2392163 ~ 2400882 (-) True LOC113528063
XM_034309996.1 mRNA upstream 57473 2433149 ~ 2538111 (-) True LOC113528062
XM_034310001.1 mRNA upstream 57474 2433150 ~ 2538111 (-) False LOC113528062
XM_034310000.1 mRNA upstream 57474 2433150 ~ 2538111 (-) False LOC113528062
XM_034309998.1 mRNA upstream 57475 2433151 ~ 2538111 (-) False LOC113528062
XR_004579451.1 other downstream 355336 2003534 ~ 2007788 (-) False LOC113527889
XR_004579450.1 other downstream 355337 2003534 ~ 2007787 (-) False LOC113527889
XR_003402974.1 other downstream 863519 1499515 ~ 1499605 (-) True LOC113528659
XR_003402975.1 other downstream 863774 1499261 ~ 1499350 (-) True LOC113528660
TU241260 other downstream 1017953 1265662 ~ 1345171 (-) False G203695
XR_004579338.1 other upstream 224033 2599709 ~ 2600352 (-) True LOC117598767
XR_003402970.1 other upstream 779620 3155296 ~ 3155430 (-) True LOC113528655
XR_003402972.1 other upstream 780941 3156617 ~ 3156709 (-) True LOC113528657
XR_004579380.1 other upstream 1007155 3382831 ~ 3413767 (-) False nde1
XR_004579378.1 other upstream 1024069 3399745 ~ 3413767 (-) False nde1

Expression Profile