RNA id: XM_034310178.1


Basic Information

Item Value
RNA id XM_034310178.1
length 1710
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC117598987
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2908172 ~ 2917545 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTGGCGAGGGAAGTGAACCAACCTGGCTGGATAATGTGCAGTGTAATGGAACTGAGAGCTACATAGATCAGTGCTCACACAATGGATTTGGAATAGAGAACTGTGGACAtggtgaagatgctggagtTGTGTGCTCAAaCTTGCAGGCTCCCACATTGACTTGGATCTCCCCAAACTCTGTGGTCTCACCTGGAGAAGTCCTTCAGCTCACATGTACCACACCCGCCCAACGTGCATCTCTGTAGACTTCAGTTTGTATAAAACTGGGACATCAATAATGACACAAACTGCAGATTCTACAACAACATTTACTCTGACTGTAGATGCCTCACATCAGGGCCAGTACACCTGTGTCTATTCATACAGGGAAAGTACCTCCATATCATCCAGGAGCAACTCCATTAACATCACTGTAGTAAACTTACAGCAGCCCAACATCTCCTTCACTGCCACTGGTGGATGGTTCCACTGGGGGCCTAACGGACCAGAAGTGACTATTGGCTACGGATTCTCCGTCATTTGCTCCATTAAAGCTCAGTATCCAGGAGGTTCCTTTCACTTGGCGATCAGCGGATCCAACATCACCAGGACTCAGTCAGCTGTTAATCACTCAGCTGTCTTCCTTTTTCCTAAGGCAGATTGTGTCCATCAGGGAAACTACAACTGTACTTATGAAGTTAACGTGTCTTCACGTACCTTTACTTCCACCAAACTGCTGGCCATCACTGTGAAagGCTGTAATGAGATCAGAGTGGTGAATGGGCCGAGGAGCTGTTGCGGTCGAGTGGAGATCCAGCACAGAGcccagtggggaacagtgtgtgatgatgattgGGACTTAAAGGATGCAGAGGTGGTGTGTAGACAGCTTGGATGTGGTAAAGCCGTCAGCGCTCCTCAAAGTGCCCACTTTGGCGAGGGAAGTGAACCAACCTGGCTGGATAATGTGCAGTGTAATGGAACTGAGAGCTACATAGATCAGTGCTCACACAATGGATTTGGAATAGAGAACTGTGGACAtggtgaagatgctggagtTGTGTGCTCAAACTTGCAGGCTCCCCACATGACTTGGATCTCCCAAACTCTGTGGTCTCACCTGGAGAAGTCCTTCAGCCACATGTACCACACCCGCCCAATGCATCTCTCATGGAAATTCCACTTCCTGACCATTACCGCTGCAGTTATGACTTTGTGGTCTCGAAACAGCAGTGAGCTTTCAGTGCTGCATGGAGAAACTCTccagGTGTTGGACTTCGTCCTAAGCGGTGGTGGAAGTGTAGGAACAGTTATGACCAGATTGGCTTTGTTCCATCTAATATCCTGGAGCCGTCCAACCAGACAGAGCAAGACTACAGCGTGTGGTAATCGCTTAAGCCGTCACGTAATGCTCATGAATAATGAGCTTGCACAGCTGCTGGCTAATGGGAGATCGGGATCAATGCGGCCTCTGGTTATCAACAAGACCAACGACACTACAGTACCTCTCAACTACCACTCACCTTCGGCTGAGGTATCGGAGTGGCTCAGAGGCAAAGGATTCAGTGATAAcacagCCAACAGTTTGGGGGTTCTCACTGAGctcagctctttctctctgagtAAAGAGGAGCTGTGCAAGACTGAAAGAAAAGCCACTGAGCTGGAGGCAGTGATGAGAAAACAGAAGATGAAAGTGGATCCCAGCATAGAGGGGGGAGAATTTtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242013 lncRNA upstream 5277 2902229 ~ 2902895 (+) False LOC113528221
TU242059 lncRNA upstream 136862 2770686 ~ 2771310 (+) True G204362
TU241998 lncRNA upstream 170886 2544989 ~ 2737286 (+) True G204323
TU242111 lncRNA downstream 116726 3034271 ~ 3036163 (+) True G204410
TU242118 lncRNA downstream 147360 3064905 ~ 3072726 (+) True G204417
XR_003402893.2 lncRNA downstream 275159 3192704 ~ 3200055 (+) True LOC113527909
TU242361 lncRNA downstream 298242 3215787 ~ 3218884 (+) True G204633
TU242421 lncRNA downstream 435753 3353298 ~ 3356906 (+) True G204678
XM_034309777.1 mRNA upstream 129 2867768 ~ 2908043 (+) True LOC113528221
XM_026916953.2 mRNA upstream 51919 2855396 ~ 2856253 (+) True hspb9
XM_034310177.1 mRNA upstream 216458 2622170 ~ 2691714 (+) True LOC117598986
XM_034309962.1 mRNA upstream 649916 2239609 ~ 2258256 (+) True nbr1b
XM_034310179.1 mRNA downstream 1329 2918874 ~ 2936656 (+) True LOC113528204
XM_026916895.2 mRNA downstream 86063 3003608 ~ 3012859 (+) True pyya
XM_026916120.2 mRNA downstream 97438 3014983 ~ 3031164 (+) True mpp2a
XM_026916304.2 mRNA downstream 170817 3088362 ~ 3146182 (+) True LOC113528048
XM_034309925.1 mRNA downstream 242388 3159933 ~ 3174285 (+) True kat7a
XR_004579364.1 other upstream 752323 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 1022694 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 1317097 1561594 ~ 1591075 (+) False syt3
TU241205 other upstream 1551845 1353334 ~ 1356327 (+) False kmt5c
TU240880 other upstream 1671560 1220512 ~ 1236612 (+) False paqr4a
TU242114 other downstream 86127 3003672 ~ 3012859 (+) False pyya
TU242330 other downstream 275167 3192712 ~ 3200133 (+) False LOC113527909
TU242670 other downstream 1049213 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 1049213 3966758 ~ 3986284 (+) False limd2
TU242672 other downstream 1049213 3966758 ~ 3986284 (+) False limd2

Expression Profile