RNA id: XM_034310184.1


Basic Information

Item Value
RNA id XM_034310184.1
length 5132
RNA type mRNA
GC content 0.46
exon number 27
gene id LOC117598990
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7020471 ~ 7045978 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaactTGTGAAGTCATAGATGGGGAAAGTCACGTGACGCTCTGCTCTCACCTGTGGCTGTTATTAATGCTTCACCTCTGGGGTTCTTTAAATCGAGCTCCTAACACGGATCTGACTcgaatttctgtcattttttttaaaaacctccaGAGCAACGTGACAATATCCGACGTGCAAGTTAGTGCCTGAAAGCGTGCGTTTTTAACATGCACAAACAGGCGCTAACTGTCCATTCATCATGACCAGGATTTCTCTTCATCTTCTCaatgtaattaaatgaatgtagttaaaaacaaatgagCTGAAGGTGCTGAGGATGTTCCCCCCGAGAGAAAACCGCTGTCACCGCTTCCAGGCCAACATCTTTAACAAGAGGAAATGCCAGAACTGCTTCAGACCTGCTGAATCCCACACACTCAGGGAATCTGATTTACACGCAACGAAACCTGTGAAAGCTGGGTGGCTTCTTTTAGCACCAGAGGGTATAGACTTTCTGAATCCTGCTCATAAGAACCGGAAATGGCAGCGACGGTATTTCATACTGTATGAGCATGGGCTTCTGCGCTACGCTCTGGATGAGATGcctgGTACTCTGCCCCAGGGCAGTGTGAACATGAGTGAGTGCAGTGACGTGCTGGACGCCTCATCCCAGACCAGCTTCTGCAGCAGTCTACCTATGCTCAGTGACCgagattattatataagaaCAGAGAATGAAGAGAACATCACTGGGTGGCAAGAAAACCTGCTCATTCAcacaaatgctgcaaaaacaaaccaaaagaagCGAAGGAGAGAGCAAGCAGTCCCACTGCATAACCTAAAGAAGCACACACTACCTGAAAGAAACCAGGTGTCTGATGGAAGTAATAGCAGCTATATCCTGAACACCAGCTGCAGCAGTGGTAGCAGAAGCACCAAGAAAAGAAGCCCTGAAAACAGTAGAACCGCTAACAgcataattattaaacaaagtGTTAATATTGGAGATCTAAACACCAGGATTGGTGCTGAAGGCATTAGTGTTGGTCGATGTGGTAGTAAAGACACAAGCAGCAGTGATATGGAGGGTGTGGAGGTCGGTTGTCCACTCTCTTCTTCTCCAGGGGCGGGGCATCACAAGGAACCCAAGGAGCTCAATGGGAAAGGAGGAGTCCACTCCAGCAGCAGAATGAGCCGTGCCAACTCTTCGAATACCTCCTCCAGTAGTTCCTACCTCTTCTCAACGCTTAGTCAACTGCCCACTCACTTCAGCACAAACGCTAAGAGCAGTGAAGACTTGCTCCAGAACACCATTATgcgATCACAAGTGATTAGTCAGTTTGAGCAGGAAAATGGGATGTATATGCCTGCCAGAGAGCAGTGTTCCTCTTCATCAATATCCACCTGTTCTGCTGCAGAATATGATCAAGACGACAGAGCAAATCACAGTACAACACGGGCGTTTGCTCGTGGTCATGGTGCATCTGGTGTCTCTGCTTCCATTCGCCGACGCTCCAAATCATTGGAGCGCAATCTGGCTGAACACACTCCCACGCCTGACTTGTTAAATTTTAAGAAGGGATGGATGTCAAGATTGGGAGAAGATGGAAAGTGGAGGAAGCATTGGTTTGTTCTCACTAACCAGAGTTTAAGATTCTACAGGGATTCGGTTGCTGAAGAGGCTGCAGATCTGGATGGTGAGATCAACCTGTCCACCTGTTATGACATCACAGACTTTCCTGTGCAGAGGAACTATGGCTTTCAAATTCATACTAAAGATGGAGTTTTTACACTCTGTGCAACAACATCTGGGATTCGCCAGAACTGGATTCGGGCAGTTATGAAGAATGTTCAGACATCTGTTGCCCCTGATGTCACATGCTCTTTTCCTCAAAACGTGCCAGTGGGCATGGTTTCTGAATGTAGATTTCCTTTTGCTTCAAACTCCTCATGTttagaggaggagaagaggagcaGTGTCAGTGAACGACGCAGGGAGGGGCATTACAAAACCTTTGACTGGGCTGAGTTTAGTCACATGCGGAAGAAAAGGGAGACACTCAGCAGGCATTCAGGAATAGAATCAGAGTTTGTCTGTGGTGACTCCGTGCCCCCTGCACCTGCATCATCTCCTGAAGACCCTGTCACAAGCTCCATTACAGTGGTGCATACTGAGGCGGGCGAGGCTCCACATGTTACAAAGACCACAGACTCGTCACCGCTCATGGTGAGATCCAGTATTGTCGCCAGTAAACCAAGTGATCAGAAGAGTACAGAAGTTGGtggtgtggatttttttaatgacatttctaATGCACAGatggaagagaagaaagagGCTGATCTTTACACCTCGCCCTCACCAGCCACATTTTCCTCATTGTCAGTGCAAACAGAGTGGCAGTGGGAGCTGGAGCTTAAAAACACTGAGTTGATTGGCAGTCTGGACTGCCTACATGAAACAGAGTCAAAACTGCAGAAAACTGAAGCCACCCTGAGGGAACGAGAGAGTGAGCTGGAGGAATTGCGAAGTTGTTTGGAAGAAGTTTCAGAACGTTTGAAGGCTGCAGAGGAGGTGCAGGCTCTGAAAGATGTTCGCCTACAGAGACACTTGCGCCTTCTGGAGGAGAGTCAGGAAAGGGAGAGGAGGAGTCTCAGTGATAGTCTTGAGCATGCAGAGAAGCATGGGAAGGAACTGGAGGAGAGGCTTATGCAAACAGAAGCGATGCTGCAAAAGATGCCAACAGGGGGCATAGTGGAGCAGTTGGAGAGAAAGTGCCAAGAGCTGCAGAACCAGCTAGATGAATCGGACAGCGAGTTGAGTAGGTTGCAGGCACGGCTTCAGAATGAGGAGACGCTGTACTATGATATGGAGCATAACTATGAGCAAGTATGTGAGGAGTTGGAGTTGGTGCGCGGCACATTGCAAAACTGCGAGAGGGTATGTGAAGAGCGCTTTAGAATCCAGTTGGAGCAGCAACAAGAAAAGCTTAATAGGAAGGAGCGGGAGCTGCAAGAAGTGTTTCTGAAAATGGGTTGCTCGGGTGCGACTCTGGAAATGTCTGAACACATGTGGCTGAAAGATGCCTGCCACCATCTTCAGGAGAGCCCAAGCACTGGGGAGAAGGTCAGGAATTTTGGGTTTGGTGATTTGGGGAAACAACCAGTTGCACAGGGAGATGAATCAGAACAAGTAATCTCTGTGATACAAGCATTGGAAAGCAAATTGTGTGACACAGAGGAGAGGCTTCAGGAGATCAATGTGCATCTccagcaacaacagcaaaaacttGGTGATAAGGTAAATGCTCTTAAAGTTGATGAGCAATGGAGTGTGCAGATACCCAATGAGTCATTGGGACTAGGCAATAGAGATGACAAACCAGATGGAAAATGTTGTCGGATCATACGAGAAAAGACTGCGATTAATACTAAAGTTAACTTGGTTACTAATAAGATGCTTAACTTTGATCTCCAGGAAGCCTTGCATGAAGAAGTTACAAGTCCAAAGAAGGGTTTATCTTGTGGGATGACTAGCAGGATGCTGTCCCTAGAAGCATTGGTCATCCAGAAGATGGCTTCTGCACTAGAGCATCCCAGCAAACAGCTCCTAGAGGGGATTTCAGAGTTGCAATCCCAGGCCAAGGCCCTTAGAGAGGCTTATGATGGGAGCTCTGAGGGGCCAGTCACAAGGAATTACTCACAGTTGTTTTCATACTATCAGGAGTTGGAGGTGGCCGAGCTGGCACGCGTCTCAGCTGAGACAGCTGCGCAGATAAAGGGACAAGAAGTTCAGCGACTGGAAGCAGAGTTTGAGAAAAAGCTCCAGGAGCTTCAGCAAATCCATGAGGAAGAGATGACTCGTTTCCATGAGTGTTGTATCCAGAGCCAGTCACAGACTGTGACCCCCACAGAATCCAGTAATGGAGATAGCAAACTTTCTATGAAGGAAAGAATCAGTGAGCTGGAGCTGCAGATTAGATGCTTGGAAGAGGAGATTCGCAGAGGAGATGCAAACGCCTTGAGACAGGCCTATGAACAGGAGCTGGAGACACTGAAGGTTACCTGTGAACTTGGCTTCGGCAGCATGGAGCAGAGTCATCAGAGGGTGATTGAGGAGATGCAGCGGCAACATCAGATAGAGGTGGAACAGCTgctggaagagaaagagagagtactCCAAGAAGAAACCAATGCCACAATTGCAGccATTGAAGCCATGCGCAAAGCTCATAAGGAGGAGCTGGAGAAAAGTCAAAAAGCTCAGCAGAATGGAGCCAGCACAGACATCAACAAGCTGCGTGCCCAGTTTAAAGATGAGCTGGATTCACTACACAGGGAACTGGAGGTATTATCTGAGCAGTACTCTCAGAAATGCCTGGAGAATGCACACCTGAGTCGAGccatagagacagaaagacaagcCCTGATCTCTGTAGAGAGAGACAACCAGGAACTCCACACACGCAATCAAGAGCTGAATAAGCACTTGGTGGCTGAACTCTCCCTAATGCAGTCTTGTGTGAATGGAGGAGTGGACCAGTCAGAGCTGTCTCAGGGCAAAGATGTGATTCAGCTGGAGgtggcGTTAAGAGTGAAGGAGTCAGAAATTCAATGTCTGAAGCAAGAGATCAGCTCACTAAAGGAGGAGCTACAAGCTGCAAACAGACGTTGTAAGAAGCTGCTGAATGAGTTGAGTGTTTCAGGTGTCAAATGTCAAAGTGCCTGTGTTAAGCACAGTGCCGAGACTTACAGACAACGGACCCAAAGTTATGatgtGATAAAGTCAAAAAGTAATCCTGACTTCCTGAAGAACCGTATTAAACCAAACCAACCAACCAGATCCAAGaGTCTGAAGGAACGTCTCTCTGTCCAGGAGAGAATGAAGCTTTTTGAATCGGGCAGCAAATAGAAAGATCTGATTGTGTCCCTGTATGTGTGCACTTTTCACAATTTTTGTGTGTTGTATATGagcttaatttaatttttaatatttgtacaTAAAGGTAatgggtttattttttaaaatttgttattgTATATTGTGATGCTGAGATCTTTCTTTGGTCTGTCCCTTCTTTCCCTGGTCTGTTTTGTCAAATATTtgctataatttatttttatagcatttttagTTCATTGGAAATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245054 lncRNA upstream 18303 6930320 ~ 7002168 (+) True G206955
TU245037 lncRNA upstream 89085 6898842 ~ 6931386 (+) False G206942
TU245030 lncRNA upstream 120539 6898842 ~ 6899932 (+) True G206942
TU245032 lncRNA upstream 120539 6898842 ~ 6899932 (+) False G206942
TU244902 lncRNA upstream 227073 6790822 ~ 6793398 (+) True G206835
TU245151 lncRNA downstream 8408 7054386 ~ 7058819 (+) True G207025
TU245223 lncRNA downstream 248507 7294485 ~ 7296973 (+) True G207084
TU245258 lncRNA downstream 272049 7318027 ~ 7318360 (+) True G207111
TU245255 lncRNA downstream 273160 7319138 ~ 7321930 (+) False spsb3a
TU245299 lncRNA downstream 340038 7386016 ~ 7388543 (+) True G207140
XM_026916184.2 mRNA upstream 830 7007148 ~ 7019641 (+) True eps8l1a
XM_034309690.1 mRNA upstream 830 7007174 ~ 7019641 (+) False eps8l1a
XM_026916185.2 mRNA upstream 830 7011251 ~ 7019641 (+) False eps8l1a
XM_034310303.1 mRNA upstream 83931 6921699 ~ 6936540 (+) True pold1
XM_034310302.1 mRNA upstream 84082 6919007 ~ 6936389 (+) False pold1
XM_026916950.2 mRNA downstream 38463 7084441 ~ 7102215 (+) True eftud2
XM_026917244.2 mRNA downstream 62221 7108199 ~ 7131967 (+) True LOC113528597
XM_026917243.2 mRNA downstream 72545 7118523 ~ 7131967 (+) False LOC113528597
XM_026917242.2 mRNA downstream 77288 7123266 ~ 7131967 (+) False LOC113528597
XM_026917245.2 mRNA downstream 78784 7124762 ~ 7131967 (+) False LOC113528597
TU244415 other upstream 759614 6254468 ~ 6260857 (+) False LOC117598831
TU244376 other upstream 825507 6190165 ~ 6194964 (+) True ypel3
XR_004579365.1 other upstream 845105 6160334 ~ 6175366 (+) False mapk3
TU244359 other upstream 885900 6130783 ~ 6134571 (+) True si:ch211-198p11.6
XR_003402939.2 other downstream 38463 7084441 ~ 7096679 (+) False eftud2
XR_004579327.1 other downstream 62200 7108178 ~ 7115935 (+) False LOC113528597
trnac-gca_18 other downstream 226482 7272460 ~ 7272531 (+) True trnac-gca_18
trnac-gca_21 other downstream 253635 7299613 ~ 7299684 (+) True trnac-gca_21
TU245701 other downstream 807213 7853191 ~ 7853509 (+) True G207480

Expression Profile