RNA id: XM_034310186.1


Basic Information

Item Value
RNA id XM_034310186.1
length 3390
RNA type mRNA
GC content 0.46
exon number 19
gene id LOC113528198
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8843197 ~ 8873465 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGACACAGGTAGGGGAGGTCACAGTCTACATGTGCTTGGAATATAAATGGAAGTCTAGTACATTTAGAGACACAGGACATCAGGAGACAGAAAACTACCTGAAACCAGAAGAGACACACGATCATGGAGATTAATTTGTggaaagttgtgtgtgttgtatgtgctCTACTCCTTAACGCTACAGGCTCACACGCCCAGCTGGCTGTGTGTGGTCGGCCTCCACTGAACACCAAGATTGTGGGTGGTGAAGATGCTGCTCCTGGGTCCTGGCCTTGGCAGGTCAGCATTCAGTCAGGAGGCAGCCATTTCTGTGGTGGCAGCCTGATCAATGAGAACTGGGTCTTATCGGCTGCTCACTGTTTCCAAAGcatTACTGCACCTGAAATCACAATCTATCTAGGAATGGAAAGTCTGGAGGGGACTAACCCTAATATGCAGAAAACAGGCACTAGTAGCATTATTAATCACCAAGAGTATAACTCTGAGACCAATGACAATGATATTGCACTAGTCCAGCTCTCCTCTTCAGTTAATTTCACCAATTATGTCATGCCAGTGTGCCTCGCAGCAAGCAACAGTTCTTTTCCTGGTGGTACTAATGTCTGGGTCACAGGATGGGGTAAAATTGCATCCAGCGTTAATCTGCCGTCCCCTAAAACCCTGCAGGAGGTGCAGGTGCCGATTGTCAGTAACAGTGACTGTGCAAAAGCATATGGATCTGGTTCTATCACAGACAATATGATGTGTGCTGGCTTAACTCAAGGAGGAAAAGACTCATGCCAGGGTGATTCTGGAGGTCCACTGGTGGTCAACATCAATGGAACATGGGTTCAGGCTGGGATTGTGAGCTTTGGCAATGGCTGCGCTTTACCTAAGATTCCTGGTGTGTACACCAGAGTGTCTCAGTACCAAGACTGGATTAACAGCAAGATCAGCAACAATCAACCTGCATTTGTTACATCAAAAAGCAATCGTGACTCCCCCAGCCTCTTCTatctgttcctttctttctccgtAATCCCCatcctcccctccctctctatATTCTAtaAGACAAcaaaaagtgtcttagtaaaTTATTGGGCCGCCAAGAGCCATGAGAGCAACTTCAATGCACCTTGGCAAAGATACTACAAGTTACTGGACTGTACTGGATGGAAGAAGATCATTCTTTCCTCTGTTAGAGTGTTAATCATTGTGGTGGAGGGCTCACATGCCCAGCTGCCTGTGTGTGGTCGGCCTCCACTGAACACCAAGATTGTGGGTGGTGAAGATGCTGCTCCCGGGTCCTGGCCTTGGCAGGTCAGCATTCAGTCAGGAGGCAGCCATTTCTGTGGTGGCAGCCTGATCAATAAGAACTGGGTCTTATCGGCTGCTCACTGTTTCCAAAGcatTGGTGCAGCTTCTATCAGAATCTTACTAGGAATGGGAAATTTGGAGGGGACTAACCCTAATATGCAGGAAACAAGTGCTAGCAAGATTATCATCCACCAAGACTATAACTCTGACAACAGTAATGACAATGATATTGCACTAGTCCAGCTCTCCTCTTCAGTGATGTTCAATGATTATGTCATGCCAGTGTGCCTCGCAGCAAGCAACAGTTCTTTTCCTGTTGGTACTAATGTCTGGGTTACAGGATATGGTAAAATCGGTTACAATGTTAATCTGCCGTCCCCTAAAACCCTGCAGGAGGTGCAGGTGCCGATTGTCAGTAACAGTGACTGTGCAAAAGTATATAGACCTGGTTCTATCACAGACAATATGATGTGTGCTGGCTTAGCTGAGGGAGGAAAAGACTCATGCCAGGGTGATTCTGGAGGTCCACTGGTGGTCAACATCAATGGAACATGGGTTCAGGCTGGGATTGTGAGCTTTGGCAGTGGCTGCGCTTTACCTAAGATCCCTGGTGTGTACACCAGAGTGTCTCAGTACCAAGACTGGATTAACAGCAAGATCAGCAACAATCAACCTGGATTTGTTACATCAAAAAGCAATCGTGACTCCCCCAGCCTCTTCTatctgttcctttctttctccgtAATCCCCatcctcccctccctctctatATTCTATGTGTTGGCGGTTTATATGAATgcgGTTGAGGTATGCTGGACCAGCTCACATGCCCAGCTGGCTGTGTGTGGTCGGCCTCCACTGAACACCAAGATTGTGGGTGGTGAAGATGCTGCTCCTGGGTCCTGGCCTTGGCAGGTCAGCATTCAGTCAGGAGGCTTCCATTTCTGTGGTGGCAGCCTGATCAATGAGAACTGGGTCTTATCGGCTGCTCACTGTTTCCAAAGcatTACTGCACCTGAAATCACAATCTATCTAGGAATGGAAAGTCTGGAGGGGACTAACCCTAATATGCAGAAAACAGGCACTAGTAGCATTATTAATCACCAAGAGTATAACCCTACCACCCATGACAATGATATTGCACTAGTCCAGCTCTCTTCTTCAGTTACTTTCACCAATTATGTCATGCCAGTGTGCCTTGCAGCAAGCAACAGTTCTTTTCCTGGTGGTACTAATGTCTGGGTCACAGGATGGGGTAAAATTGCATCCAGCGTTAATCTGCCGTCCCCTAAAACCCTGCAGGAGGTGCAGGTGCCGATTGTCAGTAACAGTGACTGTGCAAAAGCATATGGATCTGGTTCTATCACAGACAATATGATGTGTGCTGGCTTAACTCAAGGAGGAAAAGACTCATGCCAGGGTGATTCTGGAGGTCCACTGGTGGTCAAGTCCAATGGAACATGGGTTCAGGCTGGGATTGTGAGCTTTGGCTATGGCTGCGCTTTACCTAAGATCCCTGGTGTGTACACCAGAGTGTCTCAGTACCAAAACTGGATTAACAGCAAGATCAGCAACAATCAACCTGGATTTGTTACATCAAAAAGCAATCGTGACTCCCCCAGCCTCTTCTatctgttcctttctttctccgtAATCCCCatcctcccctccctctctatATTCTAGTGATGATAGTCAAAttatacacacaagcacaaatgAAAGGAGTAAGCTAACATCACAGTATTTTATCTATGTCTTGCAGAAAATCCATACTTAGCTTTTAGCTAAAACCTAAAAGTTTAGTTTAAAGATCCACAAACGAAAGGAGTGagctaacattactgtattCTAGCTATTTATTTAGCTACAATACTTTGCTTTTATCTGTAGCTTTTACTTACTTACCTTAAGTACTTACCTCGAGTAGCTCAGCTTTTTTTGGTAAAGTCCATAGAGAGAAAGCCGAGTTGGCTATCTGCAGAATGTTGCTCCAGTCTGTTCTCTTGTACCCCCTGTCCATGTTGCAGACTATATGTACCTGAGAGTCTATATACGTATATGACacattaaaagtaaaacaacaaaaa

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246211 lncRNA upstream 37764 8804488 ~ 8805433 (+) True G207932
TU246198 lncRNA upstream 70721 8754701 ~ 8772476 (+) False LOC113528294
TU246265 lncRNA upstream 75292 8764526 ~ 8767905 (+) True G207980
TU246197 lncRNA upstream 83404 8752715 ~ 8759793 (+) False LOC113528294
XR_004579363.1 lncRNA upstream 83405 8753247 ~ 8759792 (+) False LOC113528294
TU246433 lncRNA downstream 83795 8957260 ~ 8958068 (+) False asphd1
TU246445 lncRNA downstream 108562 8982027 ~ 8983311 (+) True G208105
TU246490 lncRNA downstream 148710 9022175 ~ 9022947 (+) True G208120
TU246492 lncRNA downstream 153824 9027289 ~ 9027537 (+) True G208122
TU246494 lncRNA downstream 156206 9029671 ~ 9029875 (+) True G208124
XM_026917121.2 mRNA upstream 358253 8454003 ~ 8484944 (+) True LOC113528522
XM_026917167.2 mRNA upstream 485046 8311016 ~ 8358151 (+) True ngfra
XM_026916463.2 mRNA upstream 617192 8219525 ~ 8226005 (+) True tmub2
XM_026916464.2 mRNA upstream 617192 8219527 ~ 8226005 (+) False tmub2
XM_026916181.2 mRNA upstream 624846 8212034 ~ 8218351 (+) True asb16
XM_034310049.1 mRNA downstream 2767 8876232 ~ 8882985 (+) True LOC113528197
XM_026916345.2 mRNA downstream 13940 8887405 ~ 8893797 (+) True LOC113528067
XM_034310187.1 mRNA downstream 29263 8902728 ~ 8904664 (+) True LOC113528196
XM_034310050.1 mRNA downstream 36205 8909670 ~ 8915323 (+) True LOC113528195
XM_034310051.1 mRNA downstream 43483 8916948 ~ 8921493 (+) True LOC117598844
trnas-cga_1 other upstream 834930 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 989688 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 1543513 7299613 ~ 7299684 (+) True trnac-gca_21
trnac-gca_18 other upstream 1570666 7272460 ~ 7272531 (+) True trnac-gca_18
XR_004579327.1 other upstream 1727262 7108178 ~ 7115935 (+) False LOC113528597
XR_003402909.1 other downstream 23153 8896618 ~ 8902677 (+) True LOC113528069
TU246534 other downstream 188100 9061565 ~ 9063315 (+) False nupr1b
XR_003402918.2 other downstream 1070841 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 1475937 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 1498950 10372415 ~ 10417881 (+) False G208781

Expression Profile