RNA id: XM_034310190.1


Basic Information

Item Value
RNA id XM_034310190.1
length 3412
RNA type mRNA
GC content 0.41
exon number 19
gene id LOC113528182
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14955058 ~ 14972584 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttgccttaaatTTGTGATGCGCTTCAGCTGGAAGAGCACTACAGATGAAGTAGGTCTCTTACCTACAAACCTGACGTTATGGAGTTCTAATTTTTTGgatatgatttaattttcttATTTGCAGCTTTAATTGTGGTGTTTGTATCAAAGGCTAGTATGTTATCTACACAGAGAATCCTGAAATTCCTCATTACTATGCCATTCCTCTTTGTCTTTCTAGGACCCACAACAGCTTGTGTGACACGTCGATGCCTGGCTAATGATCTcgttaaaaaaaacctgtacaGTGCACCCCAGTCTCCGGAGTGTTTTACTGATGTGAACCTCACCTCCATCCAGTATGAGACGCTGTCTGTCAACACCAAAAGTATGCAGTTCTCTAGCCGCATTAAAATTACCATGGAGTGGACTGACCCAGACCTTAAATGGTCAGAGACAAATTACACATTTGACGAAATCATATTGCCTGTTAAGAAAATATGGACTCCTGATCTCACTGTTGAGAATGCAATATATGTGGACGTAAATCCTGTTACTAACGATATAGTGGTGAAAAGTGATGGCACTGTGAACTATGCTATTGTCATGTACACAACGGCTGTGTGCAGAATCAACCTACTCACCTATCCTTTTGTTCAAGGCTCATGTCCTGTGGCCATCAACGGATGGAACCAAAGCTCTTGTGGGCTGCATATCCTGTATGGCTCAGTATCTGCACTAAGAAATGAAGGAGCTGAATGGAGCACTGTGTCAGTGAACCTCaaacaggaaaacaacacaaacaaccaCAACTACATCTAcGTCACTCTGTCCAGCAACCCCTTTAAAGCAATGGTATCACTGGTCCTGCCCAGTGCATTAATCATGATAGCTGATCTGGTGAGTTTTGCTTTGCCACTGGACGGGGGAAAGCGCAGCTCCTTCAAAATCACACTGGTGCTCAGCTTCACCAtgttcctcctcatcctcactgACTACCTTCCTAACAGTGGACCATGCAGCCCTCTATTACATTATCACTTCTGCTTCTGCATGGTCATTCTGGTGCTGAGTATGCTGATATCCATGGTGTTCACAAAGGTGGCAGCGGAGGGCAACATTCTGTGTCGCAGGCTTCCAAAGCTGAGTAAATCAGGTCAAACAGGAACACAAtttgttgacatgattgcagaCGGGCAATCTCTCAGGAAGATCGTGAATTTTGTGGAGAAGATGGATAAAAAGGACAGCGAGATAAAGAAAAAGCAAATGTTGGCAACCAAGTTGGACAAAATCTGTCTTTGGGCATATGTGAGCCTTGATGTCATTTACAGTTTATGCATGATTGCTTTTGCCACAACAGATTCTTGTAACGTTGACAACTTGGATTTCTGGGGACCAGGGACCCCCAGGGAACAGTGCAACATGGGGTCATCCAAGAGAATCCTGAAACGTTTCagcatcatttattatttaattgTGTGCTCCAACTTTATGGTTGGATCTTTGGCAAGTTGCATCACGCGTCGATGCCTGGCTAGCAAGCTGGTTGCAATGCAGCTTTTCAGTCCTCCAATGCCTCTGGAATGTACTATTACAGTGAATCTCACATCCATTCAATATGAGACCCTGTCTGTGGATACTAAAGCCCTGCGTTTCTCAAGTCGCATTAGAATTGACATGGAATGGAAGGACCCAGACCTTGCATGGACCGATACAGAgtacacatttacagaaattatGCTGCCAGTTGACAAAATCTGGACTCCTGATCTAACTGTAGACAATGCAATCGAAACAGATGTGAAGCCTGTCTCTACTGATATACTGGTGAGACGTGACGGCACTGTGCAACATGCTATCCAATTGTATACTACCGTGGTGTGTGGAATCAACCTTTTTAACTACCCTTTTGTACTGGATGCATGCCCAGTAGCCCTTAATGGATGGAGAGAAAACAGTTGTGGCCTACGTTTCCTCTATGGGAATGTATCTTCAGTGGGAGCAAGGCGAGGTGAATGGGTAACTATGTCAGTGGAGCTACATCAGAACAAACAAAACCTGGACCGCAACTATCTCTATGTCACTATGTCCACCAACCCATTCAACACAATAGTGACGCTCATTCTCCCCAGTGTGCTCATCATGTTAGCTGATCTGGGGAGCTTTGCTCTGCCACTGGATGGTGGAAAACGCAGCTCCTTTAAAATCACTCTGGTGCTCAGCTTTACTATGTCCCTGCTCATCCTCACTGAGCACCTGCCCGACACCGGCCTCTGCAGCCCCCTGATCCGTTATCACTTTTGTTTCTGCTTGATCATTTTGGTTATGAGCTTGCTGTCATCCATGGTGCTCTCACATTTTGCGGACAGTGGCGCCATCTTGTCCTGCAGGCGCCCAAAACCATGTGAATTAAGCAACACCGGTGGCAAAGATGAGATCAAAAAGGATATAAACCTGAATGGTGTGTCTACAATCTCAACTGATGTGACTACCAAGGATGTGTCGATCCAGAAGATTGTGACTTTCATGGAGAACGTAGAGAAgacaaataaagagaaaaagaagaggcatgaatatgcaaatcggTTTGACAGAGTCTGCTTCAGGGCCTACCTTTGCCTTGACATTGTTTATGTCCTTTGTGTAATTGGTATCACCAGAACAGAATTTTGTAAAATTAACAATCTGGATTTCTGGATTTAATATACTATTGATGAGTTCATGAAGAATAATAGACATTATTGAAAAAGGATTTGGGCGAGTTGGGGGTTATGACTTTTAATCTTGATCATCTCTAGTGGATTTGAATTCATGTTTAAAGCAACTTTAACAAGGGGTTGTAAAAGACTTTTCAGTTTCACTGGGTTCCCAGTGCCTGAATATAGAGCATCAACAAGCTGTATTCTTTGTAGAAGCAGGTCTTGTGACTAAAACCTGGTTTCTTGAGGTCTAGCCACTAGCCTTTATACAGATATTACCATaggaatatattatattttgttgcTAAAGGTATACTTTCTAACAATGCTGATTCTTATAaattctaggttttttttttgcttattatcAAAGGAGACACTTAGCTCCTGGTTGTGTTGAGGGACAAAACCTATAAAAACATGCTCTGAAAATTGCAAAAAACCTATAAACACATGTTCTGAAAATTGCAAAAAACCTATAAACACATGTTCTGAAAATTTCAGTTTCACTCtgtcaatgaaaatgaaaagctgaACCTTACTCATATATGCAATGAAATATCCCACAGATATTACCgtagatatatattatatttttttgctaaatgtATCATTGTATACATCCTGTTTATTAGGTAAATGTATCTAATGTATTTGCTAAATGGATCTATGCATCCTATTTCCTATAATTTCAACATTCAAAATGATGTACAAATTGAAGACTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250394 lncRNA downstream 19937 14934669 ~ 14935121 (-) True G211346
TU250308 lncRNA downstream 107602 14847252 ~ 14847456 (-) True G211274
TU250303 lncRNA downstream 110746 14827235 ~ 14844312 (-) True G211269
TU250196 lncRNA downstream 333276 14619232 ~ 14621782 (-) False G211195
TU250411 lncRNA upstream 6035 14978619 ~ 14983132 (-) True rac1b
TU250397 lncRNA upstream 28361 15000945 ~ 15001328 (-) True G211349
TU250420 lncRNA upstream 62585 15035169 ~ 15036895 (-) True G211363
TU250752 lncRNA upstream 371925 15344509 ~ 15344731 (-) True G211688
TU250805 lncRNA upstream 499188 15471772 ~ 15472816 (-) False G211737
XM_026917169.2 mRNA downstream 7524 14941903 ~ 14947534 (-) True LOC113528557
XM_026917126.2 mRNA downstream 20897 14931916 ~ 14934161 (-) True amn
XM_026916006.2 mRNA downstream 45663 14900833 ~ 14909395 (-) False otop2
XM_026916007.2 mRNA downstream 45681 14900833 ~ 14909377 (-) False otop2
XM_026916005.2 mRNA downstream 48275 14900833 ~ 14906783 (-) True otop2
XM_026916674.2 mRNA upstream 7041 14979625 ~ 14986112 (-) False rac1b
XM_026916124.2 mRNA upstream 65786 15038370 ~ 15051643 (-) True cacng5b
XM_034309829.1 mRNA upstream 80960 15053544 ~ 15203184 (-) True si:ch73-374l24.1
XM_034309830.1 mRNA upstream 80960 15053544 ~ 15202792 (-) False si:ch73-374l24.1
XM_026917092.2 mRNA upstream 605870 15578454 ~ 15581065 (-) True LOC113528505
XR_004579411.1 other downstream 264926 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 434083 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 464283 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 925417 14020248 ~ 14029641 (-) False pecam1
XR_003402937.2 other downstream 948546 14004169 ~ 14006512 (-) False LOC113528401
XR_003402969.1 other upstream 499193 15471777 ~ 15471912 (-) True LOC113528654
XR_004579443.1 other upstream 2320267 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 2320267 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 2320267 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 2320267 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile