RNA id: XM_034310191.1


Basic Information

Item Value
RNA id XM_034310191.1
length 2088
RNA type mRNA
GC content 0.38
exon number 8
gene id LOC117595684
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16671145 ~ 16688599 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTCCAATTCTGTCTTCCAGTATGGATCTGTGTTCAAAGTATATTTTGTTACCAAGAAAATCATTGTCTTAGCAGGGtacaaaacagtgaaacaaGCACTTGTTAACTATGCTGAGGAATTTGGGGAAAGAGAAATCAATCACACATTCAAGTTTGCTGAGGAACATGGAATCTTGTTTTCTAATGGGGAGAACTGGAAAGAGATGAGACGTTTTGCTTTAACAAACCTTCGAGACTTTGGAATGGGCAAGAGAGGCAGTGAAGAGAAAATCACTGAGGAAATCCAATACCTTAAAGAAGTGTTTGAGAGCTTTGGAGGAAAACCATTTGACACAACTGAACCAATGAACTATGCTGTCTCCAACATCATCTCATCCATTGTGTATGGAAACAGATTTGAGTACAGTGATCCTCAATTCAAAGAAATGGTCAAAAGGGCAAATGAGAATGTCAGGATTGGTGGGTCAGCTTCTATGCGAATCTTCAACATACTTCCCTGGATAGGTCCATTCTTGAAAAGCAGAAGAACACTCCATgcgaatggtgagaaaaacaagaagcagCAATCAGGACAGAAAAACTCTCGTTTCAATGAGAAGAATCTTATCGCCACAGTGATGAATCTTTTTGTTGCTGGCACTGACACCACTAGCACAACACTGCGCTGGGGGATGCTGCTTATGGCTAAGTACCCTCACATACAGGTTCGGGTCCATGAGGAGATTGACAGGGTGATTGGAGGTCGTCAGCCAGTGGTGGAGGACAGGAAGAACTTGCCTTACACAGATGCAGTGATCCATGAAATCCAGAGACTGGCCAATATAATTCCCATGAGTCTACCCCACACCACCAGCTGGCGCAGGGTGTGCCTGGGAGAAAGCCTGGCCAGGATGGagctcttcctcttcttcagctCCCTCCTGCAGCACTTCCGCTTCACTCCTCCACCAGGGGTGTCAGAGGATCAGCTGGACCTCACAGGTGTGGTTGGGATTACAGTGAACCCCTCTCCCCACAAGCTTTGTGCAGTGAAACGGACCTAATCAAAGGAAGATAAGCAAGGCAATAATACTTCAGAGGATAGGAAAAAGcctatttttcattttactttatCTTGATGGATGTAAAAAaaaaattttcatacaATTTAAAATCCTGAAACCTGTATAATATTACCACAATTCACTTTTCTTTAAGTTATGTCTTACCATTAACAACATAAAGTTCACTGACAACTTCTCTAGGTTAATTCCACAACTGAGTGCATCTACACAGTGCATACTTTCAAATCtgccatttgtttgtttgcacagGTTTTTGAGCTGGAAATTCAAACAAGATTATTCTGGTTTGATTAGGTTTTAAACTGTTAGCACAGACAGTATATGTACTGTAAGAACAACTCTGAtgtcaacaattatttattttaacaaaattattattgatGCTAAAACTTATTTTAAGCAACACATTAAGCGGGATAAAATGTTAGTGTGAGGGATAGGGTTAGTAAGACCAAAGGGAATTGTAGAGCTAGCCTCTTTCAAGGCATCTGTTTACTTAAGCACACATTCACATTGACAAACAAAAAGTACATGCATTAGTGTAGCATGAGAACAACCCACAACTTCTAATCTTTGGAAAAGAAACtttgtttaaaatcattaaatcaaGGCTAGATTAAAACTACATCATTGACTTACtattataaatctaaaaaataatatagaCCTTGCAAGAGAGTTGGTTTATCTGGAAAAGTCTTCTTTgcagttagttttttttttacttgattaCATTTGATCTAATGTGAATTGTTACATAGCTTCTCCGCAGATATGTGCAGAACTGCACTGTAGTTGATTGATCTGTGTATACTATTTGTTAAcatattttgcaaaaataaaaatgaatatgtacTGCAATTCTTTTGTATATACTGTGGCTGCCATTTCAAAGTAATGAATCAGTGAGctcttaatttttttgtacaattttgTGTTCAAGTCAGTATTTCTAAAGACTAAAGTGTATATGTAttcactgtattttattatggCACTAAACACCTTATATAATGAACACCA

Function

GO:

id name namespace
GO:0005488 binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251473 lncRNA downstream 97578 16573120 ~ 16573567 (-) False LOC113528039
TU251459 lncRNA downstream 173913 16478891 ~ 16497232 (-) True G212319
XR_003402922.2 lncRNA downstream 215298 16453560 ~ 16455847 (-) True LOC113528275
TU251176 lncRNA downstream 517575 16151738 ~ 16153570 (-) False LOC113528178
TU251177 lncRNA downstream 517631 16151105 ~ 16153514 (-) False LOC113528178
TU251514 lncRNA upstream 72633 16761232 ~ 16764671 (-) True LOC113527915
TU251619 lncRNA upstream 143369 16831968 ~ 16832219 (-) True G212463
TU251855 lncRNA upstream 489929 17178528 ~ 17179748 (-) True G212626
TU251866 lncRNA upstream 595901 17284500 ~ 17284707 (-) True G212637
TU251872 lncRNA upstream 603761 17292360 ~ 17292723 (-) True G212643
XM_026916293.2 mRNA downstream 36408 16615091 ~ 16634737 (-) True LOC113528041
XM_026916292.2 mRNA downstream 72457 16572545 ~ 16598688 (-) True LOC113528039
XM_026916166.2 mRNA downstream 125505 16538381 ~ 16545640 (-) True LOC113527963
XM_026916944.2 mRNA downstream 133891 16501121 ~ 16537254 (-) True LOC113528411
XM_026917098.2 mRNA downstream 340606 16326885 ~ 16330539 (-) True sox8a
XM_026916431.2 mRNA upstream 2911 16691510 ~ 16736757 (-) True abca3b
XM_026916081.2 mRNA upstream 49342 16737941 ~ 16752068 (-) True ccnf
XM_026916082.2 mRNA upstream 73827 16762426 ~ 16765341 (-) False LOC113527915
XM_034310079.1 mRNA upstream 81699 16770298 ~ 16779653 (-) True LOC113527928
XM_026916255.2 mRNA upstream 131641 16820240 ~ 16829084 (-) True dnaja3a
XR_003402969.1 other downstream 1199233 15471777 ~ 15471912 (-) True LOC113528654
XR_004579411.1 other downstream 1981013 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 2150170 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 2180370 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 2641504 14020248 ~ 14029641 (-) False pecam1
XR_004579443.1 other upstream 604252 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 604252 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 604252 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 604252 17292851 ~ 17319719 (-) False LOC113528519
XR_004579439.1 other upstream 604252 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile