RNA id: XM_034310192.1


Basic Information

Item Value
RNA id XM_034310192.1
length 1310
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC113528633
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16995855 ~ 16997652 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCGCATTACCACCCCACGGTTTTCCCTACAAGTTTTGTGACTAGGGCTGCAATGATTAGTCGTCAACGTCGACGACATCAACTATAAAATTTCGTCGACGTGAAATTTCATTGTCGACACGTCGTATTATTTAAGCAGCCTCATTTAACTCATGACTTAATACTTCTTCGTTTACTGTCTATGATAAGAACACATGCAAATGAAACTGCAATGCACCGCAAGAAGTGGTGGGGGCAGTAGCATCTTTTAACCATTTGCGTcctaaatcaatcaatcaatcagtgaaGAAGTATAACACAGAGATCAACAATGGCAGAAGCTCCGGCTCCGTGTGAGCAGAATGTAATGAACTTGAGGCCGCGACTGTCTAAAGTCTGGGAgttttttaaagataataaaaataataaagtcaaGTGCACTGTCTGCAATGAGTTGGCCTACCACGGCAGTACAACGGCGATGCACGAGCATCTTAAGCGAAAACACCCAGGACTGGTGTCCAAAGTTCCAGATGGAAGTTCAAAGCAAAGGCGTGTGAATGACTTCGTCCTGCGGAGAGGCATTTGCACCCCCGAAATGGCCAGAATTCTCACTAACAGCGTTCTAAACATGCTGGTCTACGACATGAGGCCTATATCAATGGTGGAAGGCGAGGGTTTCAAGGAAATGATTCATACATTCAATCCTGACTATGTGTTGCCTTCAAGAACACATTTTACCAAGCTCATGGAGGGAAAGTATGAAACAATTCTCAATCATGTTAAAGATACTCTCAAATCAGCAAATGGGAAGATCGCCCTGACAGCCGATGCATGGGCCACCGAAGCATACCTGGGCATTACTTGCCACTATTTAAGTGATGACTGGGTATTCAAAAAGTACTGCCTGACAACAATGCCACTTGAGGAACGACACACAGGTGCAAACATCGCAGGGTGGATTGAGGAGCCTTTAGAAAAGGTTGGACTCCCTCCCTCCAAGATTGTAGGGATTGTCCATGACAATGCCCGCAATATTGTGCTAGCTGCTAACATTTTGCACGATCGACACGGGTGGCTGTCGGTTCGTTGTGCAGGCCACACCTTACAGCTGGTGGTCAACCATGCTCTGAAGCAAACACAGATCAGTAATGCACTTGGAGCAGCGAGGGCTCTTGTGGAGCACTTCAAAAAAAGTGAATTGGCTTCAACCAAGCTTAAGCTTAAGCAAAAACAGATGGGGACTCCAGACCACCGTCTCATCCAGGACGTCTCCACTAGATGGAATAGCACATATTACATGATCAACAGCAAGGTAAAAGGTACCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251602 lncRNA upstream 67873 16869758 ~ 16927982 (+) True G212446
TU251605 lncRNA upstream 68486 16923805 ~ 16927369 (+) True G212449
TU251601 lncRNA upstream 81282 16842948 ~ 16914573 (+) True G212445
TU251594 lncRNA upstream 185105 16810311 ~ 16810750 (+) True G212441
TU251563 lncRNA upstream 225727 16769928 ~ 16770128 (+) True G212412
TU251703 lncRNA downstream 54726 17052378 ~ 17055807 (+) True G212541
TU251750 lncRNA downstream 112584 17110236 ~ 17113156 (+) False srl
TU251769 lncRNA downstream 182142 17179794 ~ 17180253 (+) True G212571
XR_004579348.1 lncRNA downstream 279002 17276654 ~ 17285842 (+) True LOC117598773
TU251783 lncRNA downstream 286631 17284283 ~ 17284486 (+) True G212582
XM_034309795.1 mRNA upstream 24088 16832403 ~ 16971767 (+) False LOC113528175
XM_026917291.2 mRNA upstream 24088 16967041 ~ 16971767 (+) False LOC113528175
XM_034309794.1 mRNA upstream 31906 16832403 ~ 16963949 (+) True LOC113528175
XM_034309870.1 mRNA upstream 176587 16808875 ~ 16819268 (+) False hmox2b
XM_026916254.2 mRNA upstream 176587 16809113 ~ 16819268 (+) True hmox2b
XM_026917074.2 mRNA downstream 69585 17067237 ~ 17085755 (+) True tfap4
XM_026917225.2 mRNA downstream 89632 17087284 ~ 17112770 (+) True srl
XM_026917226.2 mRNA downstream 89633 17087285 ~ 17112770 (+) False srl
XM_026916268.2 mRNA downstream 322090 17319742 ~ 17342075 (+) True trap1
XM_026916309.2 mRNA downstream 701021 17698673 ~ 17733006 (+) False cenpx
TU251142 other upstream 850471 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 1027096 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 1182524 15813242 ~ 15813331 (+) True trnar-ucu_8
XR_004579399.1 other upstream 3503005 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 4807266 12158706 ~ 12188589 (+) False arhgap17b
TU251743 other downstream 89639 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 1186367 18184019 ~ 18341937 (+) True LOC113528485
TU252614 other downstream 1917074 18914726 ~ 18919872 (+) True smim22
TU252615 other downstream 1917074 18914726 ~ 18919872 (+) False smim22
TU252829 other downstream 2146422 19144074 ~ 19145240 (+) True G213491

Expression Profile