RNA id: XM_034310203.1


Basic Information

Item Value
RNA id XM_034310203.1
length 774
RNA type mRNA
GC content 0.49
exon number 1
gene id LOC117598995
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18576604 ~ 18577377 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCTCTCAGGCTTCTTTGCACTCAGAGGCCCTCTTGAAACAGCTCCATTCGATTGCGGTACCAATTTCATCAGAGCGTGCAAGGAGCTTGGAATGGACAAAATAGTGCAGAAGTACCTCAGTGAGCAAGGATGCAGCTGGGAATTCAACCCACCACACAGTTCTCACATGGGAGGCTCGTGGGAGCGCCTGATCGGCATTGCCAGGAGAATCCTAGATTCAATGTTTCTGCAGCTGAAAACTCGCTTAACCCACGAAGTTCTTTGCACACTAATGGCAGAAGTTACTGCTATCATTAATGCACGACCACTCCTACCTGTGTCTGCAGACCCGGAACAACCATTCATACTTTCACCGTCAGTGCTCCTTACACAGAAGACAGGAGTTCCGCCTCCTCCTGGAGACTTCTCGGACAAGGACCTGTACACAAAGCAATGGAGACAGGTTCAAGCTCTTGCAAACCAGTTCTGGACCCGCTGGAGCCGTGAATACTTACCTTGCTTGCAACACAGACAGAAGTGGACAGTACCTCGCAGAAACCTTCAAGTGGGGGATCTAGTTCTGCTCAGGGACAAGCAGATAGCCCGCAACTGTTGGCCCATGGCCAGAATCTCTGCCGTATTCCCTGGAAAGGATGGCCATGTAAGAAAGATTGAGGTCACAACAACTGACCAAGGCAATATAAAAACCTTTCTGAGGCCAATTGCAGAAGTTGTTCTACTTCTACCCAAAGACTGATCTAGAGACTAAGGTTTAGCATGCTCACAAGTTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579422.1 lncRNA downstream 199349 18375684 ~ 18377255 (-) True LOC117598999
XR_004579431.1 lncRNA downstream 500217 18070785 ~ 18076387 (-) True LOC117599003
TU252323 lncRNA downstream 522389 18050735 ~ 18054215 (-) False mettl23
TU252320 lncRNA downstream 522389 18050833 ~ 18054215 (-) True mettl23
TU252315 lncRNA downstream 533325 18041404 ~ 18043279 (-) True G213028
TU252732 lncRNA upstream 215058 18792435 ~ 18849147 (-) True G213407
TU252741 lncRNA upstream 246094 18823471 ~ 18827432 (-) True si:dkey-204f11.64
TU252898 lncRNA upstream 446381 19023758 ~ 19031157 (-) True G213549
TU252899 lncRNA upstream 447695 19025072 ~ 19072985 (-) False G213549
TU253100 lncRNA upstream 839807 19417184 ~ 19422415 (-) True G213716
XM_034310201.1 mRNA downstream 181626 18389882 ~ 18394978 (-) True LOC117598994
XM_026916697.2 mRNA downstream 414725 18101441 ~ 18161879 (-) True LOC113528252
XM_026916911.2 mRNA downstream 522388 18050803 ~ 18054216 (-) False mettl23
XM_034310063.1 mRNA upstream 133703 18711080 ~ 18720341 (-) True znf207a
XM_026916637.2 mRNA upstream 133703 18711080 ~ 18720334 (-) False znf207a
XM_026916638.2 mRNA upstream 133703 18711080 ~ 18720334 (-) False znf207a
XM_026916639.2 mRNA upstream 133703 18711080 ~ 18720275 (-) False znf207a
XM_026915999.2 mRNA upstream 158276 18735653 ~ 18756676 (-) True slc25a23b
TU252457 other downstream 199241 18376077 ~ 18377363 (-) False LOC117598999
TU252076 other downstream 722965 17828167 ~ 17853639 (-) True tsen54
TU252009 other downstream 901320 17674827 ~ 17675284 (-) True G212750
TU251953 other downstream 1150703 17386211 ~ 17425901 (-) True G212700
XR_004579436.1 other downstream 1256885 17292851 ~ 17319719 (-) True LOC113528519
trnat-cgu_6 other upstream 498892 19076269 ~ 19076340 (-) True trnat-cgu_6
TU253095 other upstream 867612 19444989 ~ 19448334 (-) False rbbp6
TU253598 other upstream 1463046 20040423 ~ 20063490 (-) False slc2a9l2
trnal-aag_9 other upstream 1835472 20412849 ~ 20412930 (-) True trnal-aag_9
TU254170 other upstream 2437062 21014439 ~ 21027259 (-) True fgf2

Expression Profile