RNA id: XM_034310233.1


Basic Information

Item Value
RNA id XM_034310233.1
length 1545
RNA type mRNA
GC content 0.51
exon number 14
gene id gps1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3641541 ~ 3657287 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCCCGGGTTACGCGCACGCTCATGCCCCGGATGTGTTTGTGAGCGCTCGGTGCTGGTTTGTGCAGAGAAGCAGGAGGAGATGCCTCTGCCCGTGCAGGTCTTTAACTTTCAGGGGTCGGTAGAGCCCATGCAGATCGATGCCGACCCTCAGGAAGACCAGCAGAATGCGCCCGACACCAATTACGTTGTGGAAAATCCCACCCTGGATCTGGAGCAGTACGCGTCCAGCTACAGCGGACTGATGAGGATCGAGCGGCTGCAGTTCATCGCTGATCACTGCCCCCAGTTACGCGTGGAAGCTCTGAAGATGGCCTTGTCTTTTGTCCAAAGAACATTTAACGTCGATGTTTACGAAGAGATCCATCGCAAGCTCACTGAAGCCACAAGGGAAATGCAGGGAGTGCCAGACGCCGTTCCTGAAGGAGCAGTGGAGCCTCCTCCCCTCGACACAGCCTGGGCCGAATCAACCCGGAAAAAAGCCCTGCTCAAACTGGAGAAACTCGACACCGACCTAAAAAACTACAAGGGAAACTCCATCAAAGAAAGCATCAGGAGGGGTCACGATGATCTTGGAGATCATTACCTGGACTGCGGTGACCTCAGCAATGCCCTGAAGTGTTACTCCCGAGCCAGAGACTACTGCACAAGCGCCAAGCACGTCATCAACATGTGTCTTAATGTAATCAAGGTTAGCGTTTACCTCCAAAACTGGTCTCATGTACTTAGCTATGTCAGCAAGGCTGAATCCACTCCAGAGATAGCAGAGCAACGAGGGGAGAGAGATAGTCAAAACCAAGCTGTTCTCACCAAACTAAAATGTGCTGCAGGATTGGCAGAACTTGCCTCGAGAAAATATAAACCTGCCGCCAAGTGCTTCCTGCAGGCCTCTTTCGACCACTGCGACTTCCCCGAGCTTCTTTCCCCTAGTAACGTAGCAGTTTACGGAGGACTTTGCGCTTTGGCTACATTCGATAGGCAGGAGCTGCAGCGTAATGTCATCTCTAGCAGCTCCTTTAAGTTATTTTTAGAGTTGGAACCCCAAGTGCGTGATATTATCTTCAAGTTTTACGAGTCGAAGTATGCGTCCTGTCTGAAAATGCTGGACGAAATGAAGGATAATCTCCTCCTAGACATGTATCTGGCTCCACATGTAAGAACACTGTACACACAGATCAGGAACAGAGCCCTCatacagTACTTCAGTCCGTACGTGTCTGCAGATATGAATAAGATGGCGTTGGCGTTTAACACCACAGTGGCGGCGCTGGAAGATGAACTCACTCAGCTGATCCTGGAGGGACTGATCAACGCTCGTATCGACTCTCACAGCAagatCCTGTATGCACGTGATGTGGATCAGAGGAGCACTACGTTCGAGAAATCACTGCAGATGGGGAAGGAGTTTCAGAGACGAACCAAAGCCATGATCCTGAGAGCAGCAGTACTACGAAACCAGATCCATGTTAAGTCTCCACCAAGAGAAGGCAGCCAAGGTGAACTGACACCCGCCAACAGCCAAACACGAATGAGCACCAACATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242844 lncRNA downstream 10570 3630694 ~ 3631383 (-) True G205040
TU242834 lncRNA downstream 21834 3617171 ~ 3620119 (-) True G205030
TU242842 lncRNA downstream 39714 3601002 ~ 3602239 (-) True G205038
TU242401 lncRNA downstream 467676 3171262 ~ 3174277 (-) True G204664
TU242266 lncRNA downstream 566265 3073977 ~ 3075688 (-) False si:dkey-283b1.7
TU242874 lncRNA upstream 46996 3704283 ~ 3738959 (-) True G205063
TU242898 lncRNA upstream 111568 3768855 ~ 3776450 (-) False kcnc3a
TU242900 lncRNA upstream 111568 3768855 ~ 3776450 (-) False kcnc3a
TU242970 lncRNA upstream 291562 3948849 ~ 3957710 (-) False G205145
TU242972 lncRNA upstream 291562 3948849 ~ 3957710 (-) True G205145
XM_034309983.1 mRNA downstream 18866 3587950 ~ 3623087 (-) False csnk1da
XM_034309985.1 mRNA downstream 18866 3587950 ~ 3623087 (-) False csnk1da
XM_034309986.1 mRNA downstream 18866 3587950 ~ 3623087 (-) True csnk1da
XM_034309984.1 mRNA downstream 18867 3587950 ~ 3623086 (-) False csnk1da
XM_034310119.1 mRNA downstream 116848 3502035 ~ 3525105 (-) False si:dkeyp-72e1.9
XM_026916575.2 mRNA upstream 1169 3658456 ~ 3669302 (-) True rac3a
XM_026916349.2 mRNA upstream 15693 3672980 ~ 3683323 (-) True prkar1aa
XM_026916909.2 mRNA upstream 99698 3756985 ~ 3760988 (-) True LOC113528389
XM_034309836.1 mRNA upstream 116296 3773583 ~ 3865700 (-) False kcnc3a
XM_034309833.1 mRNA upstream 119609 3776896 ~ 3865706 (-) True kcnc3a
XR_004579380.1 other downstream 228186 3382831 ~ 3413767 (-) False nde1
XR_004579378.1 other downstream 228186 3399745 ~ 3413767 (-) False nde1
XR_004579379.1 other downstream 228186 3399745 ~ 3413767 (-) False nde1
XR_003402972.1 other downstream 485244 3156617 ~ 3156709 (-) True LOC113528657
XR_003402970.1 other downstream 486523 3155296 ~ 3155430 (-) True LOC113528655
TU243007 other upstream 383194 4040481 ~ 4044575 (-) True G205173
XR_004579349.1 other upstream 435626 4092913 ~ 4117643 (-) False dcaf7
XR_004579368.1 other upstream 1065130 4722417 ~ 4734886 (-) False mlx
TU243400 other upstream 1070807 4728094 ~ 4734805 (-) False mlx
TU243535 other upstream 1432049 5089336 ~ 5091922 (-) False G205633

Expression Profile