RNA id: XM_034310237.1


Basic Information

Item Value
RNA id XM_034310237.1
length 1476
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC113528362
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3948916 ~ 3950931 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATGCTCGCAATTGTCTGTTAACAACAATGGGTTTCAACCAAGTGGGGCTTAGTGCACTGCTGCTATTTGCAGTTGGGCTGTCAACAGCACAGTTGGTGAGcttgggggatcttcaggctcCTGCTGGACTTCAACCTAACAAGCCAGGGCAGTCTTCACTGCAAATGAGTGCTGGGTTTCCTTCTCAATGGATGCAAAGTCCTTCCCAAGCTCGAAGCCCTGCAGTAGCCCCACTTGGACTGCGGCTTCAAGATCCTTCAGATGCTCAAGACCAGCAAGTAATGCAGAGACCAGTGAAGAAACTGACTTGGCGTTTTCCGGCAGCACCACAAATCCCGACGCCCCCAACACCTGTGCACTTTGTAAGGCAGTCTGATCCTGTTCTTACCCAGGGTATTGCAGCAAGGTGTAATGAGACTGCAGTGTATGTAGAGGTGAGGAAAGACCTGTTTGGAGCTGGTCCAACCCTCAACATTGCTGCTTTCACACTGGGAGGCTGTGCCGCTAAAGGAGTGGATGCGTCTTCTCAAGTCCTTATCTATGAATCGGCACTGCATGGTTGCAACAGCAAGTTGACAGTGACTGCAAATGAGCTGGTCTATATCTTCACCCTTGGTCTTGCTTCAGTGCCTTTAAGTGGTACTCCTATTCTAAGAAGAGCTGGTGCTAGGGTTTTCATTGAGTGTCACTACCCAAGACTCCACAATGTGAGTAGCAGTGCCATCATGCCTGCTTGGATGCCGTATGCTTCTGCCCAAGCTGCTGAGGAGCTTCTTGTCTTCTCCTTGAGGCTCATGATGGATGACTGGATATCTGAAAGGCCATCCAACCAGTACTACCTGGGCGAGCTTATAAATATTGAGGCCTCAGTACTGCAGTTCCACCACGTGCCCCTGCGTGTCCTTGTggacagctgtgtggccactgCTGTGCCTGATGTAAATGCGGTCCCCAGATATTCCTTCATTGAGAACTATGGGTGCTTGCTTGATGCCAAGCTTACACAGTCCGGTTCCCACTTCATGCCCCAGACTCAAGCAGCTAAGCTGGGATTTCAGATTGAAGCCTTCAGGTTTCAGCAAGGGAACAGTAGCTTGGTCTACATTGCGTGCATCTTGAAGGCAACAGCAGCATCTGCCCCTGCTGACACTGAGCACAAGGCTTGTTCTTTCTCTGACAACAGATGGACTGCTGCATATGGTGCTGACCAGGTGTGCGGCTGTTGCAGCAGCAGCTGTGCCTTGAGGAAGGGACGTGCCTTGAGGAAGGGACGTGCCTTGAGGAAGGGACGTGCCTTGAGGAAGGGACGTGCCTTGAGGAAGGGACGTGCCTTGAGGAAGGGACGTGACCTGTCATCAGAGCAAGgcCTGCAGTTAGTGAAAGAAGTAAGCCTTGGCCCAATCATGGTCCTGGAAAATGATTGGTAGTCTAATGACTTTCTGATCTTTACCttaataaatggttaaaatgggAAA

Function

GO: NA

KEGG:

id description
K19928 ZP3; zona pellucida sperm-binding protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242596 lncRNA upstream 65957 3853496 ~ 3882959 (+) True G204832
TU242626 lncRNA upstream 79173 3864913 ~ 3869743 (+) True G204860
XR_003402906.2 lncRNA upstream 80819 3856054 ~ 3868097 (+) True LOC113528035
XR_004579351.1 lncRNA upstream 82578 3856054 ~ 3866338 (+) False LOC113528035
TU242579 lncRNA upstream 162338 3776604 ~ 3786578 (+) True G204815
TU242706 lncRNA downstream 155012 4105943 ~ 4107728 (+) True G204912
TU242762 lncRNA downstream 240806 4191737 ~ 4192099 (+) True G204965
TU243084 lncRNA downstream 404608 4355539 ~ 4356186 (+) True G205242
TU243087 lncRNA downstream 405387 4356318 ~ 4356536 (+) True G205245
TU243092 lncRNA downstream 408474 4359405 ~ 4360374 (+) True G205250
XM_034310066.1 mRNA upstream 1371 3935396 ~ 3947545 (+) False ddx42
XM_034310068.1 mRNA upstream 1371 3935419 ~ 3947545 (+) False ddx42
XM_034310065.1 mRNA upstream 1371 3935421 ~ 3947545 (+) False ddx42
XM_034310067.1 mRNA upstream 1371 3935466 ~ 3947545 (+) False ddx42
XM_034310069.1 mRNA upstream 1371 3935572 ~ 3947545 (+) True ddx42
XM_026916871.2 mRNA downstream 8126 3959057 ~ 3960638 (+) True LOC113528358
XM_026916875.2 mRNA downstream 15802 3966733 ~ 3983080 (+) False limd2
XM_026916864.2 mRNA downstream 39827 3990758 ~ 4019393 (+) True map3k3
XM_034310183.1 mRNA downstream 78878 4029809 ~ 4030450 (+) True LOC117598989
XM_026917237.2 mRNA downstream 83635 4034566 ~ 4044375 (+) True gfap
TU242330 other upstream 748783 3192712 ~ 3200133 (+) False LOC113527909
TU242114 other upstream 936057 3003672 ~ 3012859 (+) False pyya
XR_004579364.1 other upstream 1793067 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 2063438 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 2357841 1561594 ~ 1591075 (+) False syt3
TU242670 other downstream 15827 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 15827 3966758 ~ 3986284 (+) False limd2
TU242672 other downstream 15827 3966758 ~ 3986284 (+) False limd2
TU242673 other downstream 15827 3966758 ~ 3986284 (+) False limd2
trnae-cuc_26 other downstream 20248 3971179 ~ 3971250 (+) True trnae-cuc_26

Expression Profile