RNA id: XM_034310258.1


Basic Information

Item Value
RNA id XM_034310258.1
length 1923
RNA type mRNA
GC content 0.50
exon number 11
gene id faf2
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22755981 ~ 22763871 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTGACGTGTCAGCGGACGTCGCCTTGGCTTAAACGTCATCACGTTGTGTTCGAAGGGGATTGGCGAGGTAAGATGGCGGCGCCAGAGGAGCAGGAATTATCTCAGGCTCAAACTGAGAAACTCCTCCAGTTTCAGGACCTGACGGGACTGGAGTCAATGGACCAATGCCGGCGCACATTAGAACAGCACAACTGGAACATCGAGgcTGCAGTACAAGACAGACTAAATGAACAGGAAGGAGTTCCGAGTGTGTTTAACCCGCCACCCGCCAGACCCTTACAGGTCAACACAGGAGACCACAGAGTGTATAGCTATATTGTCTCAAGGCCTCAGCCTAGAggtTTATTAGGTTGGAGTTACTATTTGATAATGCTCCCGTTCAGgtttacatattacacacttaTGGACATATTCAGGTTTGCCCTGAGATTTATTAGGCCAGATCCACGGGGTCGCGTCACGGATCCCGTCGGAGACGTCGTGTCCTTTATACATAGTTTTGAGGAGAAATACGGACGATCGCATCCTGTTTTCTACCAGGGAACATATAGTCAGGCTCTGAACGATGCCAAACGGGAACTCCGCTACTTGTTAGTTTACCTTCATGGTGAAGACCACCAGGACACTGATGAATTCTGCAGAAACACATTATGTATTGAAGAGGTACTGACTTTCATCAACACGCGGATGCTGTTCTGGGCGTGCTCCACTAGCAGGCCTGAAGGATACAGAGTGTCTCAGGCTTTGCGGGAGAACACGTATCCCTTCCTGGCCATGATCATGCTGAAGGACCGCAAGATGACTGTGGTGGGCAGGCTGGAGGGTCTGATCCAGCCCGAGGATCTCATCAACCAGCTCAACTTCATCATGGAGGCCAATCAGACTTACCTGACATCCGAAAGGCTCGAAAGGGaagagaggaaccagacacagGTGCTGCGGCAGCAGCAGGACGAGGCGTACCTGGCGTCTCTGCGCGCCGATCAGGAGAAGGAACGCAAAAAAAAGGAGGAGCAGGAGCAAAGGCGGCAGGAGGAAGAGGCGGCACGGCAGACCCGCCTAGCCGAGGAGAGGAGGCAGAGGACACTCGCTGAAGAAAAAGAGCGCAAGTCCGAGTGTCTTCCCCCCGAGCCTCCACAGGACGACCCAGACTGCCTGGAAATCATGTTCAAGCTGCCCAATGACACGCGCGTAAAGCGCCGCTTCCTCTTTTCCCAGTCTCTGACGGTAATCCACGACTTCCTGTTTTCCTTGAAAGAGACGCCGGAGAAATTCCAGATCGTGACGAGCTTCCCGCGCCGCGTGCTGCCGTGTTTGCCTACGGAGGAGCAGCCGAACCCCCCGACGCTAAAGGAGGCCGGCCTGAGCCGCTCCGAGGTGCTGTTCGTGCAGGACCTCACAGACGATTGACATTCAGCCCAAAAACCCCGCTTCCTCACACACGATTGCACTCGGCCCTTTTCTGTTCGGCTCTGTGAAACGGCCGCTGTGTGCAAGGGATCGCTGAATCTCCCATTGATTAAATTAAGGATCTGCCCCATCCTCCTGACAGGTAACGTTTCATGTAAGTGGAAGGTGAACAGCCTTGTAAATACGACCTAGATATTTAAAGACGAGTGTGAATATAGCCcaattgttttggttttttttttttttttttttttttttaaagcaaatcaaAGTTGACCAGCTAACATACAATGACCATTACAAGGGTTGATGAAAGTTTGTGACTCATAACATTAAATTCACCTGGAGGGGCGGAGCCACAGCTTTTCTCTGTGGCTGTGTATGTTATAGTAGTAAAGTCTGCCCATAGTGTGCCTGTGGTCATTCATAAACGCCTCCCGTCTTTCATCTGAACGGGCTGCTCATGTAAAGATGTAATTTTCCTAttctaaattaaacattttaaaaccgt

Function

GO: NA

KEGG:

id description
K18726 FAF2, UBXD8; FAS-associated factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255292 lncRNA downstream 874 22754560 ~ 22755107 (-) True G215494
TU255308 lncRNA downstream 18502 22737276 ~ 22737479 (-) True G215509
TU255306 lncRNA downstream 21886 22733729 ~ 22734095 (-) True G215507
TU255283 lncRNA downstream 51502 22656542 ~ 22704479 (-) False smim13
TU255043 lncRNA downstream 212001 22446122 ~ 22543980 (-) True G215262
TU255279 lncRNA upstream 5766 22769637 ~ 22778819 (-) False cltb
TU255287 lncRNA upstream 17452 22781323 ~ 22815252 (-) False G215489
TU255291 lncRNA upstream 24345 22788216 ~ 22797514 (-) True G215493
TU255286 lncRNA upstream 44528 22808399 ~ 22815252 (-) True G215489
TU255289 lncRNA upstream 58849 22822720 ~ 22826241 (-) True G215491
XM_034309816.1 mRNA downstream 26128 22706554 ~ 22729853 (-) True cdhr2
XM_026947021.2 mRNA downstream 51498 22698404 ~ 22704483 (-) True smim13
XM_034309655.1 mRNA downstream 59158 22678164 ~ 22696823 (-) False LOC113546904
XM_026947036.2 mRNA upstream 5768 22769639 ~ 22779068 (-) True cltb
XM_026947037.2 mRNA upstream 5768 22769639 ~ 22779061 (-) False cltb
XM_026947038.2 mRNA upstream 5768 22769639 ~ 22779057 (-) False cltb
XM_026947083.2 mRNA upstream 63073 22826944 ~ 23035173 (-) True unc5a
XM_026947066.2 mRNA upstream 521837 23285708 ~ 23297814 (-) False dok3
TU255282 other downstream 51502 22698413 ~ 22704479 (-) False smim13
XR_004579404.1 other downstream 336071 22409234 ~ 22419910 (-) False LOC117598969
XR_004579403.1 other downstream 336071 22413667 ~ 22419910 (-) True LOC117598969
TU255018 other downstream 391716 22339042 ~ 22364265 (-) False LOC117598814
XR_004579410.1 other downstream 434248 22321174 ~ 22321733 (-) True LOC117598975
TU255280 other upstream 5766 22769637 ~ 22778819 (-) False cltb
TU255434 other upstream 373055 23136926 ~ 23156666 (-) False G215624
TU255581 other upstream 560614 23324485 ~ 23327870 (-) False fam193b
TU256261 other upstream 1776964 24540835 ~ 24588450 (-) False usp7
trnad-guc_6 other upstream 2100776 24864647 ~ 24864718 (-) True trnad-guc_6

Expression Profile