RNA id: XM_034310266.1


Basic Information

Item Value
RNA id XM_034310266.1
length 5443
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC113523795
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 25570311 ~ 25614308 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtaggtgtgtgtggttatgtgtgtgtctgtgtatgggtgtgtgtgtgtgggcaggtgTTACAGAAGGGCGGCACAGGGCCAGGTGTTCTTCCCTGTCAGcctttcacacacacccactgagCATCAGATGAGCGCTGATGAAGTTTTTACTgtcagtttttgcttttttctgtttgaaGCAGGTGGATTTTACAGATGGCTAAGAGCAGCATCTCTCCGAGGAAAACTCTGAAGCGCCTGTTTTTCTCCAAAAGCACCGCAGACCTGCAGGAATGCGGCGAGAAACAGGAGAGCAAATTCCACACACTGTTCAaatggagagagaagaagaaggacaaGAGAGTGGAGTCTCCTGAACCTGCACCAGAAGAAGCGTACGATGGAAGAGACTGGAATGCTGCATCTATTTACGGCACTGTGcccaggtcaaagaAAGGGGTGTTCTCTCGTTCTGAGACTGACCTCCATAAACCCAAGCGCTTTGCCACCTTCTCTTTTGcctggaagaagaagaagaagaacagaaatctgTCTCAGAGCTCCTCAGGTATCAATGTggagtcagaggtcagaggtcacatcAGAGAACCAGAGGAGGAGAAGATCGAAGAACCTTCCCTCAGGCAAGAAGTGCATTCTGAGCTAGCTGAGATTGAATCAGTGGAGAATGATGCTGGAAGCATGCAAGGTGAAGATCCGCATGCAGTAGATACGCTAGATAACACCGAGGGCATGTCTGTTTCACACAGCGACTCCTGGTTTTCTGACTGCGATAGTTGCCTTACTCCTCTAGAAAGTCCTGATTGGCGTTTTGATGAGAATGAAATTGACTCTGACAGAAGTTCCTTAAGCTCAGTTGCCATAATGCCTGAAGGCCGCTGCTCACCAATCGTTACCTCTTGCTTCAGCACTTCAGACCACTCCATCAACAGCAGACTCATAACAGTACACCATCCGCGAAAGTGCATCAGTGCTGATAGCAGGGATCACTCCTCCACACTTCATCAATGGGGCATGGCCAGAAAAAATCCACAGTGGATCGTATCACCTGCCTCCACCTTGGACTGGGATGTAGCTGAGAAATTCGAGGAGGTAAATGCTAACTTGGCCCTGGGCTATCCTGAACAAAGCCCCAGTCAGCTCAATGAAATCACTGATTCTAAAAACAGACCTGCAGATGACAGAGATGTATCACTTTACGAACCTGAGATAGGATTCCACAGGGACCGTTCTCCCATCATTGATGATACCATTCAAGAAAATGAAACTTTTAGGAAAAATGAGGAGAACATGGATCATGTTGCAGGTCCTGATTGTGTTTTATCCATCTCACAAGAAGTTCCTGGAGAATTAGTTCCTCTTTCCTGTCCTGATGATCCCGAGGTCATCTACTCAACAACAGAAATTAACAGCCACTCTTTTGCTGAAAATGATGGAAATCCAGCTTCAGTAAATATTCCTCTAGCTTACCTTGAGACAGACCTCTCACCTCTATTGACAAGAAGAAACATCATGGTATCTGACCCTGACCCTGCAACCTTTGACCTCTTAAGGTCCTCATACACCAGTGGCCTGAATCACAGCAATAACTTCTCAGATCTGCTCTCTGAACCTGACCATCCAAAGCAAGAACAAGAACCTCAAGAACCAACAGTCTCCACCAGTCTCTCATTCGATACGTTTAACAAATCCTTCACTCCTGAAAGCATCCGCTCCACTCCCACAGATCACGTAATGAGATATTCttacatttctgatttttttcaccGATCTTTCTCTGAAGACGACGAATCAGAAAATTGCAAAGGAAACAATTTGGAAGCAGATGAATGTGTTGAAGAAGGAACTAATGAAATCTCAGCTCAAGCCAGTAGATCTGCAGTGTTTGAGGAGACGTTCTATTTATCGGAAGAAAAGGAACCTCACGGTTTTACAGGAAATAATGAGCCTGTGTGTGGGACTGTGATACGTGGAAATGAATTTTATACCATTAATTCGATTAACAGTAATTTGAATGAGTCAGTTAACAGGAAATATTTACAAGATGATGGAAATGCAGTGATGTTAAATACAGAAGAAAACCTTACAAGAAAGCAGGAAAGTGACATGGCAGAACCAAGAAGATTTCAAACCGAGGACATGCTTGGATCTTCTTCCATCACTCCTGAGATAAAGGAGAATGTTGAAGAAAAGACATTTGGCCTGGAACAGGTGTTTCTCAGGGATGAAGGAGATACACAAGTAGAATTAAGTGGAGAAAGTGAAGCACCACCAGGTGAAGTCAACCAACAGCATGCAGATCTCACTATTATCAAACCAGACATGCCAGttctgcaagtgtgtgtgtctgaggaaTGTGTCACTGCCCCTCCCTTCAGTCTGCACAGTGAAGTGTCAGTCACGGACTGCAAGACAGAAACACACCCGTATGTGGAGGCAGGGTCAGGCCACTCCCAAGAGTCTGGATCTCCGATACCACCACAATGGGAGGACTCGACAGGGGGTGGAGCAAATGACAATGTTGTTAAGCTCCATGTGGATAGAGAAGACATCCATACACAGGAGCCAGAGACAAGCTCTGTCACCTATTACCGAGTACCAAGATTTGAATCTGCTGAGCCACGAGGACTACCAGAGACCAGAAACACTTTCCAACAAATTCAAGAGCGACAAAACGGTGCTGAGCAAGAGCACCAAGACGTTGTCGAGAATCCCATCCTCCAATCAGAGAACGCAGCCGATAGCAGTAGAGATACCTGCGAAATCCTCACGGAAAAAAGCAATACTCCAGGAGGAATCGTTGTTTGCATCAGAGAGTTTGGTGAGGAAGATCATCAAGAATCAACAAGAGAGAGGACACTCTCAAACCTTCAGCCTGCACCAATACACACATCATTTGGCTGGTTCCCTCATGCCTCATTCCCTCTCCTCAGCACAGTAATCGAAGAGTCTGACACCGAGGTTCCCGTAGAAACTTGTCCTGAATCAGACACAGACATGAGTGTGTCTCATGTTGGGGTGCTGAGCACCACGTTAACTCTAAAGCCCAAAGTGCCTCAGGAAAGACGAGAAGACGGCAAAAAAGTGCACAAGGTGTCGCTGGTGAACAACAGCAGCACCACAAACAGCTCCGTGCATCAGAGACGTGTTGTGGATGAATTCGAAAATGGGGTTAGAAACGATGACACCGTGGACAGTGGAACCAGACAGGAGCTGGTGGACGACTGGAAGCCGAGGCACGACAAGTACCGTATTTTTGAAGAAGAATCGAGATCTTCTTTAACAGACAGATCGGAGTCTGAGGTTTCAGGTAGCACACACCTGTATTCTTCACTCTCCAGCAGCTCCGAGTATGAACCAACCGTGCgctcctccctctccttctcttctgaGCGAGAGTGGGAAACCCTGCCCTCTGCCGTCTCCTTGGACACAGCTGGTAGTCACGGTAACACTACCTGTTGGAATGCGAGGAGCGAAGTCCAGGTGAGCAGCGAGAGCCAGGCAGGTGGGAGGAGCTGGGCAGGGCTTGCTGAACCTGCCAGGGAGAGTGAGGTAGAAAGAGacggagaaaaaataaatacagactcGTATTACAGAACAGAAGAGACGGACGAATTCCTCTCCGGTGTCTTCAAGGCGACTCGTGTGGAGCTTTCTCCCACTGACGCCGATCCGGAAAGCCCAGCTCTCGCCTCTCCACATGACATGGACACTCTGGTGGACACGCTGAAAAGCATGGCGCCTCCTGTTCGACACCGGTCCCTACGCGGCACCTCCAGTCTGCCCTTCTCGTCTCTGCCGCCGATTGTTGAAGATGCCACCAGCACCGCTGCTCTTGGGGTTGGGGTTTCCGGTATCTCCAGCCCGACCTCTCCTGCACCTGCTGAAACTTTCAACAGCCTGCCGCCGGACCTGGGGTTGAACTGGAGCACCTCCAAAGATATGCGTTCTCCTCTGACAATGATGACCATGCTAAAGGAGCAGCAGGGTCAGGATCCACAGGGACGCTCTCTTATCTTACCGCAGAGAGCTTCAGCTCTCAATAGCATCATCATGCGCAAGAGCTCGCTTCCAAACCTCAAACTGGATGAGGGATCTCACGTTAATGGTATTTTCGGAACCTCACGTCTGGACCACAGCCTGCTGTTTTCCAATTACCGATCCGAACAAACGGAAGAGAACGGCAAGCCGTCAGGTCACCTGTCTCTCTTCCGAGCAGCCTCGTTGCCTGAGGTTAACTCCGGACACGACTACCTCAGCAAGATTTCCGGACCGGACTCGTTGGGGTCTGTAGGGTCCTCTTATGAGCTGTCCTTCCTCACGTCGCCCCCAAGCTCCCTTCCAGGGTTGATCGAGACGTCTCATATCAGCAGGAGCCCTTTGATCATCCACAGCCCCACTCCTGAGAGTCCTACCTCCAACAACACACCTTCTGTGTTGCACAGCCTTTCACCAGAATCATCAGTTAAACCCCCGAGCCTGCAGCGGAGCCTCAGCGCCGGCGCGTCTTCCATCGGATCGCCTCTCCATAATGACCTCGGAAACAAGTTCGGTGTTACCCAGGAGCCTGGACCGGACAGGAACCTACTGGCCAAGTACAAAGCGTTCCCAGATGCCTACCTCACTAAAGAGAAAGAACACGGCAAACTGAACCCTCGGCCTGGGAAGATGTTCATATACAATCGTCCAGGACGGCAAGGACAGAGGATCGAGGTGAAAGGAGACGTGATGGACGCTACGGAGTGGGAGTTTCCAGAAAGCATCTCCATCAGAGTGGTCCGAGGAGGCTGGGTTTTGTACGAGAAGCCGGAGTTTAAAGGAGAGAAGTTTGCACTGGATGAGGGAGACATCGAGCTGACGAATCCATTCAGACCGCCGGAGGACGAGCCGAGAGCCGAGCAGAACGGAGAACAGGAGAACGGAGAACCCACACACGCAGAACCGAGACGCTTCGTCATCGGGTCACTGCGCAGAGCAGTGAGgGACTACAGCGTTCCTGAGATCTGTCTCTTCCCCGAGGAGAACGCTGAGGGAAAGAAAGTGGTGTTCAGGGACACATCAGACGACGCCCGAATCTACGGCTTCCCCATTAAAGCCaactccatcatcatcaacGCTGGGCTGTGGCTGGTGTTCGCAGAGCCGTTTTTCCAGGGCGTCCCGCGGGTCCTGGAGGTCGGAGGCTTCCCAAATCCAGCCGCCTGGGGCGTCACACACCCCTACATAGGCTCACTACATCCTCTCAAAATCGGAGAACCGAGAGTGGAGAGACCCAGCGAGCCGAAACTGGTGATCTACGACAAACCGTATTTCTCCGGGAAAAGCCGAGAGATTTACACCAACATGAGAGACTTCATAACCAAAACAGACCAACAGCAGACGGCCTTCATGTACAGCGTCGGGTCCATGAAAGTCATCGGtggcgtgtgagtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256812 lncRNA upstream 174428 25395622 ~ 25395883 (+) True G216817
TU256652 lncRNA upstream 303201 25262056 ~ 25267110 (+) True G216672
TU256668 lncRNA upstream 339839 25230204 ~ 25230472 (+) True G216686
TU256657 lncRNA upstream 381268 25166500 ~ 25189043 (+) True G216675
TU256656 lncRNA upstream 384909 25157680 ~ 25185402 (+) True G216674
TU257061 lncRNA downstream 181996 25796304 ~ 25890447 (+) True G217035
TU257115 lncRNA downstream 285766 25900074 ~ 25901489 (+) True G217082
TU257228 lncRNA downstream 453440 26067748 ~ 26072680 (+) True G217175
XR_003402457.2 lncRNA downstream 465846 26080154 ~ 26086876 (+) True LOC113523785
TU257220 lncRNA downstream 526269 26140577 ~ 26146174 (+) True G217170
XM_026909796.2 mRNA upstream 15339 25541731 ~ 25554972 (+) True prdm1b
XM_026909848.2 mRNA upstream 81607 25388777 ~ 25488704 (+) True LOC113523790
XM_026909841.2 mRNA upstream 291944 25268864 ~ 25278367 (+) True c13h17orf75
XM_026909867.2 mRNA upstream 349038 25155536 ~ 25221273 (+) True xylt1
XM_034309934.1 mRNA upstream 517153 25035924 ~ 25053158 (+) True rab40c
XM_034310269.1 mRNA downstream 2115 25616423 ~ 25626609 (+) True crybg2
XM_026909798.2 mRNA downstream 15053 25629361 ~ 25641443 (+) True zgc:101785
XM_026909800.2 mRNA downstream 15236 25629544 ~ 25641443 (+) False zgc:101785
XM_034310267.1 mRNA downstream 61614 25675922 ~ 25683612 (+) True sgo1
XM_034310268.1 mRNA downstream 61614 25675922 ~ 25683612 (+) False sgo1
trnai-uau_8 other upstream 214719 25355500 ~ 25355592 (+) True trnai-uau_8
trnai-uau_7 other upstream 215443 25354776 ~ 25354868 (+) True trnai-uau_7
TU256462 other upstream 772633 24797254 ~ 24797678 (+) True G216515
TU256141 other upstream 1031269 24529679 ~ 24539042 (+) False si:ch211-157c3.4
TU256100 other upstream 1112307 24457070 ~ 24458004 (+) False G216197
TU257298 other downstream 691139 26305447 ~ 26306767 (+) True ier2a

Expression Profile