RNA id: XM_034310277.1


Basic Information

Item Value
RNA id XM_034310277.1
length 3733
RNA type mRNA
GC content 0.46
exon number 20
gene id ciita
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 24899421 ~ 24920755 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacagggaATAAATCAAGAATGAGATGTTTAACACGCATGTATGAGCGTGATGGGTGggttgatttattgatttaattaaatcaatattaATTTGTGAGGTGTTGAACCTGCACATAAACATCCGTGCTGTACGCAGCACTGTGCCAGTCCAGACGCCTAAATGTGAAAGTAAAACCAAAGCATATCCAAATTGCGCACCACACAGCGCCACACTTCAGTGTAAAGCGAGGACTCAGGCAGAGAGACAGCTTCCCCTGTTCAAACCCACTGATAttatcatgaaataaaaaaatggttttgCAGAATAACATGGAGCCGCGCTCTGAAACAGAACCTGAAGACATCATGACCAATCTGGATCACGGGGAAACCATACCTGATCGGCTATTGGACCTCATCGTCTCTACTCCACTTGAAGAATTTGAAGAATTTCTCAATACAAGTTTCTCGGATGAGGTCTGGGACGATATCCCAGATGGATCAGAAGATAAATCCACACTGGTATGCGAAGTTTGTGATGAGAATTCAGTTGCTAGGAAAAGGCACACCACTAAGCGTCGAgCAGGTGAAAGATCGTCAAAAAAAACACCTCGCCCTAAACGAAGTAAAAGAGCACACCAGAGCTCTGAAACGCCGCCTGAAGTCAACATGGCTGTGCAGGAAGGGGATTTCCACGTCACTGGCGTGTCCTCACTCGTACGCCTTCCCTTGACGATCGCCACCACCGCCTCTCTGATGCCACCTGgTGCACCAGCCATGCAGATCATACAAACATTCAATCCTCTCTCCCCTCCGGTGATTAAAAGCATTCTACCAGTAGGACACACCTACGTGCTGGTTTCACCGCAGTCTCTAGCTCCTGTCCCAGTGCCACAGATTGCCCCTCTTTCACCTGTCGATGGTACAGTGGCTCCTTTAGAACTCAGCATGTCCATTCATCCCGTAAGCTCGTTATCGGACAGCGCGTATAGGGGTCAGTCTCCATCCCAACTAGCTCCTGTTTCACCCTCTAAAGACAAATCACCCTCCAAAGAGTATCTTCCTGCAACCCAGCAAATCAAGAAGATGCCAGTGCTACCAAAGAGTGTTCAAGACTTCATCGAGCAATTGAAGTCACACTTAAGAGAAACATGCAGTATGATGCAAGGAGGAATGAGCATGGAGTCTCACTACATAGACACACCACTGGTACAGAGGAAGCTGATAATCAGGACTGGCAAGAATGCAAATAAATGCTTAGAGAAGGAACTTGTGGTACTCAGTGACTCAGAGCGAAAAAAGGCCACGATGCACAGGAGCCATGTTTTCCAAAACTGTGGATCCAATAACAAGCACCTGATCACCGTTCTTGGGAAAGCCGGCATGGGAAAAAGCACATTTATCCAGCGTTTGGCCTTGGACTGGTCCACCGGTGGCCTTCagcagttccagttcatctttTTGCTGAATTGCAAAGTTCTAAATCTGACTCAGGCGAGCTTCAGTCTGAAGAGTTTGCTATTTGACTCATCCACGTCTCCTTGGTGTGAGGATTCGGAGGCCATCTTCAAACACGTTCTTGCCTTTCCAGAGAACGTTCTCATTGTTTTTGACAGTTTTGATGACATGAAAGACCTTGAAGGTCTTCTTCAATCCCCCGCTACCTCAGCCACGGATGGTGACTACAGTATTAGGCAGCTATTTTCTGGTTTGTTCCAGAAAAAGATTCTGTCAGGGTGCACTCTTTTGATCGCCACCCGACCCAAAGATGTCTTGAATCAGCTACTGCGTAAAGTAGACAGTATCTTGGAGTTATGTTGCTTTTCTCCAAAGGACATTGAAATGTACATCTCAAATTATTTTGGGGATGTTTCGGAGAAAGAGGATGCACTAAGAAAAATCAAAagccaaaaatacattttcagctTATGCTCGAACCCTTTGCTGTGTCGCCTTACATGCTTTTTGTCAGCGCATCAAAAAAACAATGGTGACACGTTGCCATCGACTCTTACGGATTTATACCAAAGAGTGCTCAGCCATTATCTAGAGCCGAATGATAACCTTCAGAGATCCAAACAGGACATTGTGCAGCTGTGTAACTTGGCTTGGGATGGATATAAGACTCAAAACTCCCTTTTAaaccaaaatcaaaacaaaaacctggTAGACTACGGACTCAACTCTGGGATACTTATAACACATAAACGATGTGAAGAACCTGGCAACAACCAGGTCACTTATTTTGCTAATCTTTTTATGCAGAACCTTCTAAGTGCCCTGCTATTGGTTCATTCCAATGAGCTGAATGACAAAACGCTGGTGGCTCAGACTGCACTCCACCAACGGAAAAGGAAGTCTCAAGGAGAATGGCAAGATGTGCTACAAAGGTTTGTAATGGGATTACTCTTCCAGAAAAATACACCCCCTTGTTGTAGGGTTTTCCAAAGCAATACTGACCTACAGACCAAAAGAAAAGCAGTGGAAGTCCATCTGGAGAATCTGAAACCGGGCGAGCTGGTTCCCAGCAGATTACTTGAactgtttcactgtgtgtacgAGGCTAGGAATGTCAAACTTGCCAAACTTCTGGTCAAAAATCTACCTGAAAATCTGTCGTTTCGTGGAGCTCAGCTCTCGCCAGTTGACGTCTATGTTGTTTGGCATCTTCTTCTGCGAACCAAAGGACACAAACGGACTTTTTCCATTGACTTGAGGGACACGTCTGTTCCTCTCAGTGGTCTCAAAGAGCTGGTTGCACTGGACTGTGTGGCATCATTCCGtGCGCCTACAATGGACACCATTAACCTTTGGGAGGACCTGCATCGCAGCAACGATAAACTGAGTTTGAAAAACGCCATTGAAAAGTTTACTATAAACCCTCTGAAGGTGTCGCAGGTGTCGGATGTGGAGAACTTGGTCGTTCTTGTACAAATCCACAATGAGAAGAAGCTGCCCTTATGcGAGGCCGAGTCAGCTCTGGAGGACGGCGTCCCAGCAGTGAGACATCTTCTCAAGCTGGAGTACGAGCTCGGTCAGCAGAACAGCCCTGAGGTGTTTCTCCGGCTGGCGGAGATCTTACCTGCTCTTCAGTCTCTCCATCACCTGGATCTGGAGAATAATAAAATGGGGGATGCGGAAGCTGAACAGTTGGCTGGGGTTCTGAGCTCGCTGTTGTCTCTGAAGCTGCTGAATCTTTCTCAGAACTGCATCGGAGACGGCGGAGTGCGGAAACTGTCCCAGGCCCTGACGTCCGCGTCCTCGCTGCAGAGCCTCAGTCTGTATGGAAACGTGATCGGGGACAGCGGCGCTGAGAGCTTGGCATCGGTTTTACCGCTCATGACGTCTCTGCTGGACCTGGAtgtgaagtACAACAAGTTCACAGACGTCGGAGCCAAAAAGCTCAGTGCTGCGTTAAAGAACTCACCGAGTGTGAAGTCTCTTCAAATGTGGAATGACTGTATTCCTTACGGAGTTTTTGATCATCTTCAGATTAAAGACTGCAGGATAAAAGCTCTATAATTCACCCTTTGTTTAAGAAAGAAGGGACAAACTGCTGCTACTAACACTGTATTCTTCcggtacacacacattactgaatGCTATCGCCTCGGCAAAGACACTAATGTTCTATGGTGCGTTACTTTTGTGTTGCAatatttctgtctcatttttttcttttttataagcGAGCTGCTGTCCAATAAAGtactttttttgtaaaaaaaataaaataaaaattaggtaagttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579447.1 lncRNA upstream 47265 24829543 ~ 24854293 (+) True LOC117599007
TU256435 lncRNA upstream 161903 24738961 ~ 24739655 (+) True G216488
TU256414 lncRNA upstream 194679 24706620 ~ 24706879 (+) True G216467
TU256410 lncRNA upstream 206134 24695102 ~ 24695424 (+) True G216463
TU256406 lncRNA upstream 214889 24686438 ~ 24686669 (+) True G216459
TU256629 lncRNA downstream 104329 25025084 ~ 25025573 (+) True G216652
TU256605 lncRNA downstream 123624 25044379 ~ 25054895 (+) True G216631
TU256646 lncRNA downstream 235506 25156261 ~ 25157543 (+) True G216668
TU256656 lncRNA downstream 236925 25157680 ~ 25185402 (+) True G216674
TU256657 lncRNA downstream 245745 25166500 ~ 25189043 (+) True G216675
XM_026947116.2 mRNA upstream 5363 24867453 ~ 24896195 (+) False nubp1
XM_026947115.2 mRNA upstream 6078 24867400 ~ 24895480 (+) True nubp1
XM_026947095.2 mRNA upstream 72085 24811080 ~ 24829473 (+) True atf7ip2
XM_026947098.2 mRNA upstream 326097 24569233 ~ 24575461 (+) True c13h16orf72
XM_034310263.1 mRNA upstream 362441 24529797 ~ 24539117 (+) False si:ch211-157c3.4
XM_034309818.1 mRNA downstream 2745 24923500 ~ 24995766 (+) True clec16a
XM_026947016.2 mRNA downstream 100514 25021269 ~ 25033735 (+) True pigq
XM_034309934.1 mRNA downstream 115169 25035924 ~ 25053158 (+) True rab40c
XM_026909867.2 mRNA downstream 234781 25155536 ~ 25221273 (+) True xylt1
XM_026909803.2 mRNA downstream 268096 25188851 ~ 25691424 (+) True rpl14
TU256462 other upstream 103880 24797254 ~ 24797678 (+) True G216515
TU256141 other upstream 362516 24529679 ~ 24539042 (+) False si:ch211-157c3.4
TU256099 other upstream 443554 24457070 ~ 24458004 (+) True G216197
TU256100 other upstream 443554 24457070 ~ 24458004 (+) False G216197
XR_004579370.1 other upstream 573598 24191753 ~ 24327960 (+) False rbfox1
trnai-uau_7 other downstream 434021 25354776 ~ 25354868 (+) True trnai-uau_7
trnai-uau_8 other downstream 434745 25355500 ~ 25355592 (+) True trnai-uau_8
TU257298 other downstream 1384692 26305447 ~ 26306767 (+) True ier2a

Expression Profile