RNA id: XM_034310283.1


Basic Information

Item Value
RNA id XM_034310283.1
length 529
RNA type mRNA
GC content 0.39
exon number 5
gene id tac4
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18360781 ~ 18368589 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCAGAATATCAGATGAAATAACTTACAGCatatgtctgttttattttatttcagttactgtTTCAAATTATACAATGGAGCTTTTTAAACTTTGCATTCTGGCCTTTGTTCTATATGCACAGCTGCACACTGGTGTGTCAAGTTTCAGTGAGGACATGGATATCTGGTCCCTGGAGAACTGGCAGGGTGATCCAGCAGAAAGTGGTTTCACTCTCCATTTTGATGACCTGCTGAAGCGCTCCAAATCACAGCAGTTTCATGGGTTAATGGGCCGAAGCTTAGATATTTCTCAACCCCTGCAACTTGGTCGGAAAAgAAACAATGGAGAGATGTTTGTTGGACTGATGGGCAAGAGGTCTTCAAAGGGAGATTTTGAAGAGGAACCAGACAAGCCACAGTAATGCTAATTATGCAAACAACATGACTGGTTTTGCCTGGCTATCATTATGTAATGCTCTCCTATCTAATttatattcagaaaaaaagagttttcAATAAATCACTGAATTTGTAAACCATGTTATTTAT

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04724 Glutamatergic synapse
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252169 lncRNA upstream 384591 17980998 ~ 17982806 (+) True G212899
TU252159 lncRNA upstream 468416 17898781 ~ 17898981 (+) True G212889
TU252140 lncRNA upstream 481115 17886009 ~ 17886282 (+) True G212870
TU252066 lncRNA upstream 541047 17819418 ~ 17826350 (+) True G212804
TU252045 lncRNA upstream 585469 17781712 ~ 17781928 (+) True G212783
TU252175 lncRNA downstream 17223 18385812 ~ 18464023 (+) True G212903
TU252283 lncRNA downstream 41252 18409841 ~ 18410859 (+) False LOC113528171
TU252284 lncRNA downstream 42432 18411021 ~ 18411582 (+) False LOC113528171
TU252293 lncRNA downstream 56605 18425194 ~ 18426053 (+) False zgc:163143
TU252294 lncRNA downstream 56605 18425194 ~ 18427626 (+) False zgc:163143
XM_034309862.1 mRNA upstream 24437 18184019 ~ 18342960 (+) False LOC113528485
XM_034310202.1 mRNA downstream 41254 18409843 ~ 18415347 (+) True LOC113528171
XM_034309692.1 mRNA downstream 56590 18425179 ~ 18434528 (+) True zgc:163143
XM_034309693.1 mRNA downstream 56590 18425179 ~ 18434528 (+) False zgc:163143
XM_034309694.1 mRNA downstream 56590 18425179 ~ 18434528 (+) False zgc:163143
XM_034309691.1 mRNA downstream 56590 18425179 ~ 18434528 (+) False zgc:163143
XR_004579361.1 other upstream 25460 18184019 ~ 18341937 (+) True LOC113528485
TU251743 other upstream 1258122 17087291 ~ 17109275 (+) False srl
TU251142 other upstream 2222013 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 2398638 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 2554066 15813242 ~ 15813331 (+) True trnar-ucu_8
TU252614 other downstream 546137 18914726 ~ 18919872 (+) True smim22
TU252615 other downstream 546137 18914726 ~ 18919872 (+) False smim22
TU252829 other downstream 775485 19144074 ~ 19145240 (+) True G213491
XR_004579333.1 other downstream 932766 19301355 ~ 19313218 (+) True gng13b
TU253379 other downstream 1537613 19906202 ~ 19910165 (+) False LOC113528458

Expression Profile