RNA id: XM_034310291.1


Basic Information

Item Value
RNA id XM_034310291.1
length 4097
RNA type mRNA
GC content 0.47
exon number 20
gene id ezh1
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4527593 ~ 4549478 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGACGCTGCTAATAAACACGTCACCCCGAGCTCGGTCCGAGTCAGGCGAAGTGCGCAGCTCCAAATTGTGTAACTAACAGCCTCGGCATGCTCGCGGAGGCCCGAGGAGTTGTCGCGCGCACTCAGCAGTACCGGAAGGTTTCCGTGGGCGAGCTATCTGTGTTTTCGGTGCTGGGACGCCTTTGCTGCTGTTTTTCGGAGAGGGGGGACGCGGAGTTCTGCGCGTGAGCCGCTGGAGTGACGGCgatggaggtgatggaggaggCATCCGGCGCTCGCTTCTGCCCCACTAAAGCCCCGGGCAGCCTGATGAAGTGGAGGAAGAGGGTCAAGTCCGAGTACATGAGGCTCAGGCAGCTGAAGCGCTTCCGCAAGGCTGAGGAGGTGAAGGCTCTGTTCCTGTCAAACAGGCGTAAGATTGAGGGAAGGACCGACCTGTTAAATGAGGAGTGGTCTAAGCTCAGGATCCAGTCCATCCCTCTGTCCACACCGAGTGGCTCACTGGCCAGCAAGAAGCAGTGCATGGTGGAGTTCGGCTTTCCATCATTCCCCAGCCAGGCAGTTGCCATGAGACCCTTGACAACCGTTGCTGGGATACCATTCATGTACTCCTGGTCCCCCTTGCAGCAGAACTTCATGgtggagGATGAAACATTTTTGCACAACATCCCTTATATGGGTGATGAGGTACTGGAGCAGGACGAAGCTTTTCTTGAGGAGCTCATAGACAACTATGATGGAGTCCATGGGGATAgggACAGAGGCTTCATAAACGACGAGATCTTTAAGGAGCTAGTGGAGGCGCTCAGTCAGTATTCGGAtcaggatgaagaggaggagagcacggaggaggaagaggaggaggaagaggagaaagagcGATGCCTGAGGAAGAGCACAGGAGAGAGTCTGGCAGAGAACAAGGCCGGATCTCTGGCCTTTAAGAGGAAGCGCAGGAGAGTTGCTGAGGGCAGTGAGCTGTCTCTCAGTAAGAAAATCCCTCATGACAAGATCTTCACTGCTATTGCATCCATGTTCCCTTACAAAGGCACGACGGAGGAGCTCAAAGAGAAGTATAAGGACCTGCTGGAGCCGGCGAGTACAGTAAAGCTTCCTCCTCTCTGCACACCCAACATGGACGGCCCCTTCGCCAAGTCCGTGCAGCGAGAACAGAGTCTGCACTCCTTCCACACACTCTTCTGCCGCCGCTGCTTCAAATACGACTGCTTCCTCCACCcattCCATGCCTCCCCTAACGTCTATAAGAGGAAGACTAAAGAGATCCGGAAGGAGACGGAGCCCTGTGGATTAGACTGCTTCCTGCTACAGAAAGGAGCAAAAGAGTTTGCAGATCAGTACATGTTGAGGTCACGGAGATCTCGCCGGCGCCGTCGTCAGCCACGCCCTTCCAGCTCAACAGGCCCCGCCCCCTCAGGTTCAGCCGAGGAcagaaaagatggagagagtgacCATGAGACCACAAGTTCCtctgagggtaACTCTCGGTGTCCCACCCCCACTAAGCTGAGGCAGGGTGAGGAGCTGATGGAGGAAGGCGAGGCTCCTCTGCAGTGGAGCGGCGCAGACGAGTCGCTCTTCAGAGTTCTGCACGGCACGTACTACAACAACTTCTGCTCCATCGCACGCCTCCTAGGCACCAAGACCTGCaaacaggtatacGAGTTTGCTGTGAAAGAGGTTCTGATTCATCGAGTTCCTCTGGAAGATTTGGAGGCAGATCATGAGTTTAAGCCccaaaagagaagaaaagaaaaCAGGTTATGGGCCAAGATCCAGTTAAAAAAAGataattcATCCAATCAGGTGTACAACTACCAGCCATGTGACCACCCCGAGCATCCGTGCGACAGCTCGTGTCCGTGTGTGATGACCCAGAACTTCTGCGAGAAATTCTGCCAGTGCGATCAAGAGTGTCAGAACCGTTTCCCAGGCTGCCGCTGTAAGACGCAGTGTAACACTAAGCAGTGTCCGTGTTACCTGGCCGTGCGTGAATGTGACCCTGACCTCTGCTTGACCTGTGGAGCTTCGGACCGCTGGGACAGCAAACAGGTTTCCTGCAAGAACTGCAGCATCCAGAGAGGACTCAAAAAGCATCTGCTCCTGGCTCCGTCAGATGTAGCAGGATGGGGAACTTTCATCAAGGAGCCGGTTCAGAAAAACGAGTTCATCTCAGAGTATTGTGGAGAGCTTATTTCCCAAGATGAAGCAGACAGAAGAGGCAGAATCTACGACAAGTACATGTCCAGCTTCCTGTTCAACCTGAACAATGACTTTGTGGTGGACGCGACACGAAAAGGGAACAAGATTCGCTTCGCCAACCACTCAGTCAATCCAAACTGCTACGCAAAAGTCGTCATGGTGAATGGGGACCACCGCATCGGGATCTTTGCAAAACGGGCCATTCAGCAGGGAGAGGAGTTGTTTTTCGACTACAGGTACAGTCAAGCCGACGCTCTCAAATACGTGGGCATAGAGAGGGAGATCGACGTGGTCTGACTTTCCCACCTTCCGCCTTTCCTGCCCACAATGCACCTCTCCTCACTCAGGACCGCGGTTCTATAATGTGGCTGCCTGGATACATCTTCAGTTACAAGAAGGGATTCTGTGATGTCATAACATTGTAATAACGGTATGATATCAAAGAATCGCTCAtcacaaaatatcacaaaaaaaaaagaaaacaaaaaggtcATATAAAACgttctgtatttaaatatgGGGTTAATTGAGTTGTCTGAACTAGCGTGTCTGTTggtctgtaaaataaaaaggatGCTAGTGTTCTTATTAGAAATAACTCATACATGTCAATGATTCCCAAGAAAATTTGAAGgaaatcttaaaaatattttatacaaaagaGAATAGGCTATCTATTTTAGCTTATTCAAGTAGCTAATATGCTAATTAGTGGTGCATTAACATTCCCAGCTTAAGCTGACAGAAAACACAGGAATGCTAAACAAATACAATCTCCAGCTATAAGTTACAGACAGCCAAATGTGCTAACTTAGCAGTTTCGGTTATGCTAGCAGCATGTAGGTTAGTACAGGAAATAACAGTGTATGCTATTATACTAATACAAATGGCTCACATTCTACTAAGAACATTAGCTAGACATGAATGGTAGCACTTGCTACAGAGCTAGCGTATGGATGATtagcaaagtaaaaaaaaaaaaattacttcaaaTAGCAGTGTCCTTTCCATtactcatatttttttttctgacaagaAAGCATCAAAAGCTGCTAGTTTGGCTCATCTGGAGCAGAGAGCGTTCTTCACTTCAGTTAACCTTTTCACGTTGTGGTAAAATCTGTACACAAGCTTCTGACTAGCGATTTTAGCATCCCAATATACGCTACATAATGTATAGTTGCAAACTAGGAGACATATTTATGGTTGCTGTTAGTTTTGGTCAGTTTATTCACACGGAAATGAATGAACTTCACATCTGCAATAATGTTATCTTTAGTTATGATGCAGTGTACTGTAATGTTAGCTTGTTCCTCTAATCTGCAAAGCTTTGCCGTTTGCTACTTTGTCATTCAAGCtatattttttagaaatgtttctaTAATGCCGCCATCTCATATCAGCTACGCTAATCAGTATCTAACCGGGATCCCTGGCTATTCCAGCGCTAAGTATCTTGGCTGTGGCTAACTATGTAGCGCAAACATATACTTATTTGTAAGAGATAAACTAGTGACAGTCACGGGTATccacagggttgccaggtctcagaaATTCTAGAATCTCAAAAAACGCacaaagacctgaaactagcccaaaaaagTCAGGAATTAGAATCAGGAAGAATTTCTGATAGACAGTATCTGCAATACACCTTTTTACTCACCTGGCACAGACATTGTCCTCTCCATAATCTCCCTTTCTTTGCAATAGATCTTAAGACAGAagtggttctgtacatcatagatacattgtctgcacttacactttccctttgtttgcaaTTGCCTATGTTTGGATATTAGATTTCATTataaatttgctttaaaacaagaaggaaaaaaaaaaaaacactacatatgttttaaaaaaaaaaa

Function

GO:

id name namespace
GO:0003682 chromatin binding molecular_function
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG:

id description
K17451 EZH1; [histone H3]-lysine27 N-trimethyltransferase EZH1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243105 lncRNA upstream 133335 4393925 ~ 4394258 (+) True G205263
TU243092 lncRNA upstream 167219 4359405 ~ 4360374 (+) True G205250
TU243087 lncRNA upstream 171057 4356318 ~ 4356536 (+) True G205245
TU243084 lncRNA upstream 171407 4355539 ~ 4356186 (+) True G205242
TU242762 lncRNA upstream 335494 4191737 ~ 4192099 (+) True G204965
TU243143 lncRNA downstream 83 4549561 ~ 4551865 (+) True G205299
TU243150 lncRNA downstream 13930 4563408 ~ 4563654 (+) True G205306
TU243167 lncRNA downstream 70740 4620218 ~ 4670637 (+) False plekhh3
TU243159 lncRNA downstream 122282 4671760 ~ 4673029 (+) True G205315
TU243164 lncRNA downstream 156767 4706245 ~ 4711309 (+) False retreg3
XM_026916489.2 mRNA upstream 301548 4215915 ~ 4226045 (+) True moto
XM_026916490.2 mRNA upstream 301548 4215915 ~ 4226045 (+) False moto
XM_026916776.2 mRNA upstream 396118 4120854 ~ 4131475 (+) True ccdc47
XM_026916773.2 mRNA upstream 422839 4057751 ~ 4104754 (+) True kcnh6a
XM_026916775.2 mRNA upstream 422839 4057751 ~ 4104754 (+) False kcnh6a
XM_026916627.2 mRNA downstream 77015 4626493 ~ 4670646 (+) True plekhh3
XM_026916628.2 mRNA downstream 77015 4626493 ~ 4670646 (+) False plekhh3
XM_026916630.2 mRNA downstream 105883 4655361 ~ 4670646 (+) False plekhh3
XM_026916470.2 mRNA downstream 142999 4692477 ~ 4711316 (+) True retreg3
XM_026916473.2 mRNA downstream 163395 4712873 ~ 4721468 (+) False psmc3ip
TU242670 other upstream 541309 3966758 ~ 3986284 (+) True limd2
TU242671 other upstream 541309 3966758 ~ 3986284 (+) False limd2
TU242672 other upstream 541309 3966758 ~ 3986284 (+) False limd2
TU242673 other upstream 541309 3966758 ~ 3986284 (+) False limd2
trnae-cuc_26 other upstream 556343 3971179 ~ 3971250 (+) True trnae-cuc_26
XR_003402913.2 other downstream 163395 4712873 ~ 4721468 (+) True psmc3ip
XR_003402967.1 other downstream 540720 5090198 ~ 5090283 (+) True LOC113528651
XR_003402964.1 other downstream 541042 5090520 ~ 5090604 (+) True LOC113528648
XR_003402966.1 other downstream 541354 5090832 ~ 5090916 (+) True LOC113528650
XR_003402965.1 other downstream 541770 5091248 ~ 5091332 (+) True LOC113528649

Expression Profile