RNA id: XM_034310310.1


Basic Information

Item Value
RNA id XM_034310310.1
length 5683
RNA type mRNA
GC content 0.44
exon number 22
gene id LOC113527937
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14394229 ~ 14410677 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGTCAGAGCAGATCCACCTCAGCGTCAGAGCAGGTCgtgttgtgtctctgtgctgctgGTGGTGAGCTGTTCTTGACTCACGCTGTGTTTTGCTCATCAGTGTCGCCTCCCCTGTCACAGTGAGGAAACAGCTCTTTCCACTCCCGCTTTAAATGGATGTAACCTGGGCCGGCAGACACTAACAGCTTGTTGACTGAAACAGAAATAGGAAGAACTATGTCGCTGGTGAAAATGGAGGTTTCGTGTAATAAGTTCCAGGCGAACGTGTTCGACCAAAGCAGATGTCAGAACTGCTTTAAATCCCGCGAGCTGCACGTGACGACGCGCGAGGAAATGGAGCAGGTGAAACCCATCTATGCAAGCTGGCTCTGCCTTGCACCTGAAGGGTTGGATTTCGACAGTCCAATGCAGCGGTCCAGGAAATGGCAGCGTCGCTTTTTCATCCTGTATGAGCACGGCTGCTTAGAGTTTGCTCTTGATGAGTTGCCAAGTACAGTTCCCCAAGGAACTGTGAACTTGCATCAGTGCACTGATGTGATTGACgcagaggacaggacaggacagaaaaacacactgtgCATCATCACTCCAGACCAAGAGATTTACATCCGTGGAGACAGCAAAGAGATCAtcagtggTTGGTGCGAGCAGCTTCTAGTTTTCAGACAGACCAATGAACAAAGgcgaaggaaaaaaggaagcagGACGCCTGTTCCCTCACAGGAGGAAGCATCTATAATAAAACCTGTGTGCAGCATTGGAGCTGCATACACAGGAACAGTAGAAGACAATAAACTACGTTACCCAAGGGAGGAAGATGAACCAAGTGAGAAAACTGAGGATATGAACGTAGGCCAGGATGTGAATGTTACCACCCCTGATTCTGATTCCCTCGGCTCAGGAAAGTTGAAAACTCATGACATTAATCAGGAGACCTTCAGTGTAGACACACATCAAGCTGAGGGTGGTTCGAGCCTTCAGTTGTCCTTTCACCATCATCCGACATCTGTCCACAGCCCTGAGCCGTGGAAAACTGTGACCTGTGACCTGTCTCCATCTGATTTGCCTCTCAACAGCAGTGTTTCCCACTCTCTACATTGGCAAGAGGATGATGCAGAGAACTGTGCTAAAAAACATACTATGTCCTCATCATTAGCAAAGCATATGACACAAGACCAAGAAAATACTGAAGAACTCCATGCTGGGACACAAGAAGATAAGAACGGCAAGGATTCTTGCTTCATCACGTGCAGCATGCCTGGGGATGAGTGTTGgactaatgaaaatgaaaaacagtgtAAAATGTGTCCAGAGTGCAGCAGCAGAAGTCAAACTGGCCACATCCAGAACACGGAGAAGTCTGTAGGACTGCTGGAAGCACCACAAAGCAACATTCCTCCTCTGAGAAGACTGCAGACAGTGGAAATCAAAGCTTCAGAGTCTACCATGACGCCAGACCTTTTGAACTTCAAAAAAGGGTGGCTCTTCATGGATGACCATGATCGGTGGAGGAAGTACTGGTTTGTGCTGTCTGCTCATAGCCTACGTTATTACTTTGACTCTGGAGCAGAGGAGgtATCACAACTAGTAGGAGAAATTGACCTGACTACTTGTCACAGAGTGACTGAGCTTCATGATCAGAGGAACTTTGGCTTTGAACTATGGACTCATAGAATGGTCTACAAGTTGGCCACTACAACTGCTGGGAAGCGACAAAACTGGATCCAGGCTCTTACAAAGAATATTCAGGACCAGAATGCCCCAGATGTTGCCAGCATTCCAGATAACTGTCCATCCAGAGTGGGCCCTCACTCTGGGCCAGATGTTACTCAAGAATCCATGTCTCTGTCTTGCCCTGTCAATGAAAAGTGCTGCACAAAACAGAGATCTGATCACTATAGGAGGCGCCGAGGCCGCCCTAAAACTTCCCGCTGGACTGATATGTTAATCCAGGAAGGGACCAGAGAACAAGAGAGGGTAGAGCAGAATGCAGAAGAGAGCATCAGTAGGCGGAGGGGAAGAGAGGAGCGCAGGCAAAGGTATGCCATCGTGATGGGGTCCTCAGTATGCCCCTTAGATGAGAGGAACAGCTCTACACAGGAGAATCAGCAGcaagagagaatgagggagatTGAAGAATGTTGGCTGCAGGTGGAGAAGATGGCTatcagagaggagaagagggtGCTGCTTTACCCAGAATACCAGAGTGAGGACTCTGTTGAGATGGAGGAACTGACTGTCCGGTCAGAGTCAGCAAATCAGGAATACTCACAAGATCATGCACATGGCACAGACTGGAGTTTGGGGGAACCAACATGTGATCCTGGAACCGAATGGGAACCTCAGAAGATAGgtccaaataaacaaaatccCAGTCTGACTGACAAGTACCAAGGGCCCAAAGGGCTTGTGAGTTTGAAAGATCTAAGAAGACAACAGATCAATGACCTCCTGGACCTTTATCCTTTATCCCAGTCCAACTCTGAATTCACAAATGAACCTAAAAGAAAGAGTGAATGCAATCTGTTGCATCAGGGAATTACTTCTGACAAACCCATTAAGAGCCTCAGTTCACTTGGTTTGTGCCAGGCAAGCAGAGACTTGGGAGATGACCCTACTTGGGCCAGAATGTTCAGTGAAAGAACTGCGCTGATGATAAGAGAAGGTACTGTTTCAGATCAAGCCATGGTGAAGCTGTTATCTCAGGAAGCTGAATTCCTGACTAGACAAAATGAGGCCCTTAACCAGCGGAATCAAGAACTGGTAAACCAGCTAGCTGAAGCAGACCGAGAGATAGACAGGCTTAAGGCAGAGCTTTTCTCTCAACCAAATGGCCACCAGCCAGAACTGGAGTCCATAGTGGAGTGTTTGGAATTGGAATTGGCCAGGAGCTGTGGGCAACTCCAGGAGGCACAGACTCAGCTAGCAGAAATGGAGGATAATCTGAAAGACACTCATCAAACTCTGCAGCTGAAGGAGGCTACGCTTAGAGGCCTGGGCTTGTTAAACATGGACAGTGAATACAAAATAGCATTTCCAGAAATAATTGATAGACTCCATCAGTGTGTGCAGGTGCTGGAGTTCAAAGTCTCTGAGTTGGTGAGCCAACAATGGCTTTCAACTCTGACTTGTAAGGAACTACAGACCCAGAACACCTCTCTCATGAAATTAGAGGTTCAGAATAGTCAGAAGATAATGGAGGATGACACGAAAAACATGATGTTGGAAAGAGAGCTAGAATCTAATATACCTCTGTGTGAAGGATTGGCACACACAAAAGACGAGCAGCATCAGAACAGAATAGAAACAGTTGAAGTAGCATTAAAGAAGAGGTCCAATGTGTTTAGTTTGTTAATAGAGGTCATTCATCAACTAGCTGGAAATGAGATGCCAGAATCTGTCTCAGAACATGAGACTGCACAGATGAACCCCAAAGTGTTAAGGAGGCTACAATTGGAAAAAGACATTTGGGAAAGCTTTGTGAACACTTTAAAGAGCGCTACCTCTGATAACCTGGAGAATGAGGAAGCTGCCTGTCTACTACAGAGTGCCGAGATGAAACTAGAGGAAGTTAAAATGTACCTTTCAGCCCTCAGCATTTACAAAAGTATCAGTTGTAACCCACTAACCCTGAGCAGCAATTCAGGACCAGATAATTCAGGCAATACATCTTCAAGTAACCCTGACATTATTGGTATAAATGATGGAAAAATGGAGAAGGAACAAAATAATGTTATGTGGAAAGGTCTGAAAGAGCACATGGAGAAGAGATTGATCCTGATTGATCATGTAACATCTAAATTGGAATCATTTACCAATAATGAAACTCTTTCTGAGATAACAAGGCAGTGTCAGAAAACAAATACATTCTATCCTATAATCAGTGTTGTCATGGACATTATGGCTGCTTATTTGGTAGAGAAGCTGAGTCATTCTGTAATAATGCAAAAATCTGTAGCAATACAAACTGAAAACCAAGAGATGCTGGAACAGAACATCATGGCTGTTAATGAAAAACCTGAGGTCAGTGAAGGCACTGGGAAAGAAACTATTACCTATTTGAAAAGTCGAATTAAGGAACTGGAGCACCTGCTATCTGAGAGACTGACATCTCTACAGCAGCAACACGAAAAGGACAAGGAGAGACTCAAGGTGGACATAATGGCTGGATTTGAACAGGGCATCACCTTGTTGAGGGAGTCTCATAGGAAAGCCACAGAAGTCCTTCTCCTCAAACACCAGCGGGAGCAGGAGTTGTtaaaggaggagaaagaaagacttcTAACTGAAGAAGTGGCCGCCTGTCTCACTGTTATAGAAACTATGAAGAGAGCCCATAGCTCAGAGCTGGAGAAAATGCTTCAGAAGGCATGTCGGGAGAAGACCTATAGCGGTGGCACAAATATTGACGTGATACTGAAAAATCACAGtgaGGAGTTGTCAGCAGTTCAGAGGGAGCTGGATGCATTGTCTGAGCAGTACACGCAAAAATGTCTGGAGAATATGCACCTGGCTGAAGCTctgcaggcagagagagacgcTCTACAGCAGTATCAGTGCCAGAACCTAGCACTTAGTGCTCACAATCAGGAGCTAACTAGTCACCTTGCTGAGGAGATCATGAGATTGTCAACAGTGGCAAAGGATGGTTGTAATCATGATAGGGAACAATATGAACTGATGATCAAGCTCCAGGTAAAAGAGTTCTGTCAGGAACAGGaaattgacattttaaaaaatgaactcTATGCTGCCAAAATGGATCAAAAAGTTGCTTCAGAGAGATTCCAAGAAATTCAGACAGAACTCAACTTGGTCAAGGAGACAGCAGAACAACAAATTTCACAGCTGAATGAGAATCTGAGACTAGTTTATGAGGCCTTAGAAGAGTCTATAAAGAAGACGACGCCAGCTACTCCACTTGCTGCTTCCTCCCAGCCTGTGCTATTTAAAAGCTGACAAATATCATGTTACACTAAATTTTTCCATACctgatatttaaaatgcaatattaaattttattaggATATCCATAAAGTAGCTTGTGAAGTTTATCAGTGCAAATGAAGAGATCAGACAGCCTTCAATTGGTGTAAAACTAATCAAAGGATAAAATTTTTAGATTTGTGTCCATCACAGAATGTTTGTTAGGTTTCTGTATCATAGCAAGGCAGACACAGTGTTTCCATAATGAATATCTACACTCTAAGAGAagaagggttctttggatagttaatgaGTTTTGGGTTAAATGGGTTCTACAGCACggaaagatacacacacatctgatgcatgcataaaatatttaagGGTTTAACAAGAAGGCCAAACCAGCAAATACTTTTTCTTAGAATCTAAATCATGATGTCGATTTtgtatctttattttttgtacaAAGCTTTAAAGATCTTTAATTATGAACAAAGTTAGTTCATTGTTGCAGTCAAAATGAAATCTTGCAAATGGTGTTTACCTCTCAGTCAGAAGATAATGTAGCAACATATtcctatatatactgtatgctatacATCTAAATATGTgttgtatatttctgtattattttttgtttttgtggtgtaatataatttgttttgttatatGAGAGAGTTTGTACTGTGAGGGAGGTGGTAGGTATGGGCAAATACCATTTATTGGGTAAGACATTGGTTTGATGTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249962 lncRNA downstream 64309 14329586 ~ 14329920 (-) True G211003
TU249956 lncRNA downstream 96031 14294307 ~ 14298198 (-) True G210997
TU249932 lncRNA downstream 177357 14216673 ~ 14216872 (-) True G210973
TU249911 lncRNA downstream 258925 14135094 ~ 14135304 (-) True G210952
TU249888 lncRNA downstream 393221 13993996 ~ 14001008 (-) False mcrip1
TU250024 lncRNA upstream 51115 14461792 ~ 14462409 (-) True G211054
TU250187 lncRNA upstream 178143 14588820 ~ 14594664 (-) True G211187
TU250196 lncRNA upstream 208555 14619232 ~ 14621782 (-) False G211195
TU250195 lncRNA upstream 209097 14619774 ~ 14621782 (-) True G211195
TU250303 lncRNA upstream 416558 14827235 ~ 14844312 (-) True G211269
XM_034310166.1 mRNA downstream 3135 14379035 ~ 14391094 (-) True prpsap1
XM_034310167.1 mRNA downstream 3140 14379035 ~ 14391089 (-) False prpsap1
XM_026917236.2 mRNA downstream 191671 14183537 ~ 14202558 (-) True LOC113528592
XM_026917110.2 mRNA downstream 364588 14017615 ~ 14029641 (-) False pecam1
XM_026917109.2 mRNA downstream 364588 14017615 ~ 14029641 (-) True pecam1
XM_026917155.2 mRNA upstream 4236 14414913 ~ 14432720 (-) True LOC113528545
XM_034310045.1 mRNA upstream 36563 14447240 ~ 14451595 (-) True si:dkey-282h22.5
XM_034310046.1 mRNA upstream 36563 14447240 ~ 14451548 (-) False si:dkey-282h22.5
XM_026917053.2 mRNA upstream 52728 14463405 ~ 14465291 (-) True LOC113528481
XM_026916985.2 mRNA upstream 268073 14678750 ~ 14690132 (-) True LOC113528445
XR_003402952.2 other downstream 364588 14020248 ~ 14029641 (-) False pecam1
XR_003402937.2 other downstream 387717 14004169 ~ 14006512 (-) False LOC113528401
XR_004579330.1 other downstream 995004 13395466 ~ 13399225 (-) True LOC117598755
trnas-aga_12 other downstream 1567690 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579427.1 other downstream 1835016 12549120 ~ 12559213 (-) False tom1
XR_004579449.1 other upstream 77144 14487821 ~ 14490775 (-) True LOC117599009
TU250141 other upstream 109600 14520277 ~ 14520975 (-) True G211151
XR_004579411.1 other upstream 268073 14678750 ~ 14690132 (-) False LOC113528445
XR_003402969.1 other upstream 1061100 15471777 ~ 15471912 (-) True LOC113528654
XR_004579443.1 other upstream 2882174 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile