RNA id: XR_003402891.2


Basic Information

Item Value
RNA id XR_003402891.2
length 477
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id LOC113527891
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6187474 ~ 6189926 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAAGTCACAACCTGTTCTCGTTTGTCAGTTTGCAATAAACACGTTCTGCAAGCAGTGAAACTGCTGGGGCTGTGCAGTTGTAGGAggataatcagtgacaggggttgcagtggaGCCTGGAGCTtgtcccaggggactcggggtacAAGCcagggggacaccctggacaggatgccgacctatcgcagggcacaatcatgCACTATGGACAGTTTGATATGCAACActtgtctttggactgggggaggaagccggagtacccagaggaaacccctgaagcacagggcgGAGgagggattcgaacccccaagaCATACTAACATCTAAGCCACCGTGTACCCCATGGAGACAATCTGCTAAGAGAGTGGGATAATCAGTCATGACTCCGGTTGCTCCTGCTGCAAAAGCAGCCTCGATGTCCCGTTCTTcattacaaacaaacagatgGATCTGAATgacacaaaaagaaagaagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402949.2 lncRNA downstream 233970 5952798 ~ 5953504 (-) True LOC113528476
TU244141 lncRNA downstream 459794 5721634 ~ 5727680 (-) True G206210
TU244080 lncRNA downstream 555555 5631715 ~ 5631919 (-) True G206164
XR_003402932.2 lncRNA downstream 902569 5280730 ~ 5284905 (-) True LOC113528378
TU243538 lncRNA downstream 1095552 5089336 ~ 5091922 (-) False G205633
TU244662 lncRNA upstream 13386 6203312 ~ 6204196 (-) True G206628
TU244696 lncRNA upstream 83890 6273816 ~ 6346363 (-) True G206649
TU244981 lncRNA upstream 456171 6646097 ~ 6647814 (-) False stat5a
TU245006 lncRNA upstream 634970 6824896 ~ 6825760 (-) True G206924
TU245005 lncRNA upstream 636442 6826368 ~ 6828146 (-) True G206923
XM_034309895.1 mRNA downstream 27302 6149355 ~ 6160172 (-) True nudt9
XM_026916165.2 mRNA downstream 30625 6149355 ~ 6156849 (-) False nudt9
XM_026917015.2 mRNA downstream 81590 6026279 ~ 6105884 (-) False arhgap23a
XM_026917014.2 mRNA downstream 96344 6026279 ~ 6091130 (-) False arhgap23a
XM_026917013.2 mRNA downstream 118633 6026279 ~ 6068841 (-) False arhgap23a
XM_026916518.2 mRNA upstream 33544 6223470 ~ 6238688 (-) True atp2a1
XM_026916256.2 mRNA upstream 58856 6248782 ~ 6251486 (-) True hsp70.3
XM_026916749.2 mRNA upstream 87290 6277216 ~ 6303481 (-) False aclya
XM_026916748.2 mRNA upstream 87290 6277216 ~ 6303481 (-) True aclya
XM_034310084.1 mRNA upstream 117744 6307670 ~ 6312808 (-) False cnp
XR_004579347.1 other downstream 226424 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other downstream 226424 5953733 ~ 5961050 (-) True LOC113528542
XR_004579400.1 other downstream 236477 5940862 ~ 5950997 (-) False retsat
TU244224 other downstream 345997 5841137 ~ 5841477 (-) True G206282
TU244177 other downstream 430741 5754767 ~ 5756733 (-) True G206236
trnac-gca_16 other upstream 1080980 7270906 ~ 7270977 (-) True trnac-gca_16
trnac-gca_17 other upstream 1082329 7272255 ~ 7272326 (-) True trnac-gca_17
trnac-gca_19 other upstream 1083131 7273057 ~ 7273128 (-) True trnac-gca_19
trnac-gca_20 other upstream 1084380 7274306 ~ 7274377 (-) True trnac-gca_20
TU245410 other upstream 1128677 7318603 ~ 7321962 (-) True G207231

Expression Profile