Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003402922.2 |
| length | 876 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 3 |
| gene id | LOC113528275 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 16453560 ~ 16455847 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU251176 | lncRNA | downstream | 299990 | 16151738 ~ 16153570 (-) | False | LOC113528178 |
| TU251177 | lncRNA | downstream | 300046 | 16151105 ~ 16153514 (-) | False | LOC113528178 |
| TU251126 | lncRNA | downstream | 413161 | 16039756 ~ 16040399 (-) | True | G212018 |
| TU251124 | lncRNA | downstream | 416243 | 16037116 ~ 16037317 (-) | True | G212016 |
| TU251035 | lncRNA | downstream | 484785 | 15898090 ~ 15968775 (-) | False | G211935 |
| TU251459 | lncRNA | upstream | 23044 | 16478891 ~ 16497232 (-) | True | G212319 |
| TU251473 | lncRNA | upstream | 117273 | 16573120 ~ 16573567 (-) | False | LOC113528039 |
| TU251546 | lncRNA | upstream | 225337 | 16681184 ~ 16690337 (-) | True | G212395 |
| TU251514 | lncRNA | upstream | 305385 | 16761232 ~ 16764671 (-) | True | LOC113527915 |
| TU251619 | lncRNA | upstream | 376121 | 16831968 ~ 16832219 (-) | True | G212463 |
| XM_026917098.2 | mRNA | downstream | 123021 | 16326885 ~ 16330539 (-) | True | sox8a |
| XM_026916252.2 | mRNA | downstream | 226118 | 16225651 ~ 16227442 (-) | True | LOC113528022 |
| XM_034310215.1 | mRNA | downstream | 249569 | 16151075 ~ 16203991 (-) | False | LOC113528178 |
| XM_034310214.1 | mRNA | downstream | 249569 | 16151075 ~ 16203991 (-) | True | LOC113528178 |
| XM_034310216.1 | mRNA | downstream | 249921 | 16151075 ~ 16203639 (-) | False | LOC113528178 |
| XM_026916944.2 | mRNA | upstream | 45274 | 16501121 ~ 16537254 (-) | True | LOC113528411 |
| XM_026916166.2 | mRNA | upstream | 82534 | 16538381 ~ 16545640 (-) | True | LOC113527963 |
| XM_026916292.2 | mRNA | upstream | 116698 | 16572545 ~ 16598688 (-) | True | LOC113528039 |
| XM_026916293.2 | mRNA | upstream | 159244 | 16615091 ~ 16634737 (-) | True | LOC113528041 |
| XM_034310191.1 | mRNA | upstream | 215298 | 16671145 ~ 16688599 (-) | True | LOC117595684 |
| XR_003402969.1 | other | downstream | 981648 | 15471777 ~ 15471912 (-) | True | LOC113528654 |
| XR_004579411.1 | other | downstream | 1763428 | 14678750 ~ 14690132 (-) | False | LOC113528445 |
| TU250141 | other | downstream | 1932585 | 14520277 ~ 14520975 (-) | True | G211151 |
| XR_004579449.1 | other | downstream | 1962785 | 14487821 ~ 14490775 (-) | True | LOC117599009 |
| XR_003402952.2 | other | downstream | 2423919 | 14020248 ~ 14029641 (-) | False | pecam1 |
| XR_004579443.1 | other | upstream | 837004 | 17292851 ~ 17319719 (-) | False | LOC113528519 |
| XR_004579442.1 | other | upstream | 837004 | 17292851 ~ 17319719 (-) | False | LOC113528519 |
| XR_004579437.1 | other | upstream | 837004 | 17292851 ~ 17319719 (-) | False | LOC113528519 |
| XR_004579441.1 | other | upstream | 837004 | 17292851 ~ 17319719 (-) | False | LOC113528519 |
| XR_004579439.1 | other | upstream | 837004 | 17292851 ~ 17319719 (-) | False | LOC113528519 |
