Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003402926.2 |
| length | 346 |
| lncRNA type | inter_gene |
| GC content | 0.47 |
| exon number | 3 |
| gene id | LOC113528343 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 13463539 ~ 13475462 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU249543 | lncRNA | downstream | 17101 | 13445736 ~ 13446438 (-) | True | G210640 |
| TU249504 | lncRNA | downstream | 58182 | 13405139 ~ 13405357 (-) | True | G210607 |
| TU249469 | lncRNA | downstream | 68129 | 13390616 ~ 13395410 (-) | False | elof1 |
| XR_003402958.2 | lncRNA | downstream | 90601 | 13369454 ~ 13372938 (-) | True | LOC113528601 |
| TU249463 | lncRNA | downstream | 108954 | 13310533 ~ 13354585 (-) | True | G210570 |
| TU249602 | lncRNA | upstream | 49919 | 13525381 ~ 13525580 (-) | True | G210690 |
| TU249799 | lncRNA | upstream | 115977 | 13591439 ~ 13637837 (-) | False | G210858 |
| TU249798 | lncRNA | upstream | 153331 | 13628793 ~ 13660814 (-) | True | G210858 |
| TU249797 | lncRNA | upstream | 179572 | 13655034 ~ 13660814 (-) | False | G210858 |
| TU249813 | lncRNA | upstream | 187954 | 13663416 ~ 13663797 (-) | True | G210871 |
| XM_026917009.2 | mRNA | downstream | 28183 | 13432227 ~ 13435356 (-) | True | swsap1 |
| XM_026916221.2 | mRNA | downstream | 68082 | 13390616 ~ 13395457 (-) | True | elof1 |
| XM_026917193.2 | mRNA | downstream | 195365 | 13241850 ~ 13268174 (-) | True | LOC113528569 |
| XM_026917090.2 | mRNA | downstream | 236664 | 13223244 ~ 13226875 (-) | True | nfil3-6 |
| XM_026916923.2 | mRNA | downstream | 244466 | 13210369 ~ 13219073 (-) | True | nfil3-2 |
| XM_026916843.2 | mRNA | upstream | 19524 | 13494986 ~ 13498163 (-) | True | gadd45gip1 |
| XM_026916077.2 | mRNA | upstream | 186701 | 13662163 ~ 13669491 (-) | True | nme4 |
| XM_026916672.2 | mRNA | upstream | 195447 | 13670909 ~ 13695259 (-) | True | xpo6 |
| XM_034309975.1 | mRNA | upstream | 221151 | 13696613 ~ 13702527 (-) | False | antkmt |
| XM_026916113.2 | mRNA | upstream | 221151 | 13696613 ~ 13702171 (-) | False | antkmt |
| XR_004579330.1 | other | downstream | 64314 | 13395466 ~ 13399225 (-) | True | LOC117598755 |
| trnas-aga_12 | other | downstream | 637000 | 12826458 ~ 12826539 (-) | True | trnas-aga_12 |
| XR_004579425.1 | other | downstream | 904326 | 12548829 ~ 12559213 (-) | False | tom1 |
| XR_003402937.2 | other | upstream | 528707 | 14004169 ~ 14006512 (-) | False | LOC113528401 |
| XR_003402952.2 | other | upstream | 544786 | 14020248 ~ 14029641 (-) | False | pecam1 |
| XR_004579449.1 | other | upstream | 1012359 | 14487821 ~ 14490775 (-) | True | LOC117599009 |
| TU250141 | other | upstream | 1044815 | 14520277 ~ 14520975 (-) | True | G211151 |
| XR_004579411.1 | other | upstream | 1203288 | 14678750 ~ 14690132 (-) | False | LOC113528445 |
