RNA id: XR_003402931.2


Basic Information

Item Value
RNA id XR_003402931.2
length 292
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC113528367
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11808261 ~ 11822910 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGAAAACAAGACACGAAAACAACCCAGCTGggtcctgggttcaaGCCTACTGTCCTTACTGTCCTTGTGTTCGTGTGAGTTTCCTCCTGCTGTccagaaacatgcagAAACGACACTGAAACCCAGGAAACTGCTGTACAGACTGCTGAAGAATGCTGACAGTGTCCTTTGTAactgtgagtaaatgttttaacttgcaacattacaaaaaaaaagaaaagtttcttCTACAAGTGCTAAAATGAAACTGCGAGCTTATAGGCTCGTGATACGTAATAACAATCACTTTTt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248059 lncRNA upstream 99325 11708728 ~ 11708936 (+) True G209410
TU248037 lncRNA upstream 173780 11633912 ~ 11634481 (+) True G209392
TU248035 lncRNA upstream 190027 11618035 ~ 11618234 (+) True G209390
TU247909 lncRNA upstream 429461 11280080 ~ 11378800 (+) True cdc42ep4a
TU247679 lncRNA upstream 825968 10971980 ~ 10982293 (+) False LOC117598771
TU248481 lncRNA downstream 196953 12019863 ~ 12021132 (+) True G209775
TU248507 lncRNA downstream 238659 12061569 ~ 12061782 (+) True G209798
TU248505 lncRNA downstream 262218 12085128 ~ 12086009 (+) False tbc1d16
TU248585 lncRNA downstream 310350 12133260 ~ 12133471 (+) True G209863
TU248587 lncRNA downstream 313863 12136773 ~ 12139867 (+) False LOC113528416
XM_026917171.2 mRNA upstream 65188 11739620 ~ 11743073 (+) True s1pr5a
XM_026916500.2 mRNA upstream 130800 11671706 ~ 11677461 (+) True si:dkeyp-69e1.8
XM_026916497.2 mRNA upstream 136660 11662221 ~ 11671601 (+) False hmgxb4a
XM_034309876.1 mRNA downstream 7133 11830043 ~ 11848621 (+) False rfx1a
XM_034309875.1 mRNA downstream 7134 11830044 ~ 11850336 (+) False rfx1a
XM_034309877.1 mRNA downstream 7134 11830044 ~ 11848621 (+) False rfx1a
XM_034309878.1 mRNA downstream 7135 11830045 ~ 11848621 (+) False rfx1a
XM_034309874.1 mRNA downstream 7136 11830046 ~ 11850336 (+) True rfx1a
XR_004579334.1 other upstream 230438 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 271096 11537047 ~ 11537165 (+) True LOC113528662
TU247340 other upstream 1390380 10349402 ~ 10417881 (+) False G208781
XR_003402925.2 other downstream 335796 12158706 ~ 12188589 (+) False arhgap17b
XR_004579399.1 other downstream 1652918 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 3990332 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 4095307 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 4317420 16140330 ~ 16145384 (+) False LOC113527983

Expression Profile