RNA id: XR_003402932.2


Basic Information

Item Value
RNA id XR_003402932.2
length 470
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC113528378
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5280730 ~ 5284905 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTACTTTGCTTGGGTTTGCTTTGTGTTTGACACTGCTTGCTTCGTTATGCTTGATGATGAACAGGTCAACAGAAGACAATGGAAGCAGCTGAGATGTTGAATATCAGATTTGGCCAGAATTGGTGTCTAGACAAATAGTAACAGCAGATGAAGTAAAAGAAACCATTACACCAATGGCATGCCAAAGCTCATTTCTTCAAGAGAATTATGGCTTATTCATGTGTtcatttcaaaaacacaaaaacactggacatatttgttttgtgtcataGTTGACGATCGTTTGGTGGATGAGCGTTTTGTATCTCTGCCCCCACACTCTGGAAttctcttcccaaaaacatacgtgatctttcttcattacaggatttcaaaacccaccttaaaacacatctttttctttcttgtttttctgatctctGACTGTATGATCTGACTCATGCCGtggatttcttgtttatttcctttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243533 lncRNA downstream 188808 5089336 ~ 5091922 (-) True G205633
TU243534 lncRNA downstream 188808 5089336 ~ 5091922 (-) False G205633
TU243538 lncRNA downstream 188808 5089336 ~ 5091922 (-) False G205633
TU243539 lncRNA downstream 188808 5089336 ~ 5091922 (-) False G205633
TU243527 lncRNA downstream 223614 5056910 ~ 5057116 (-) True G205628
TU244080 lncRNA upstream 346810 5631715 ~ 5631919 (-) True G206164
TU244141 lncRNA upstream 436729 5721634 ~ 5727680 (-) True G206210
XR_003402949.2 lncRNA upstream 667893 5952798 ~ 5953504 (-) True LOC113528476
XR_003402891.2 lncRNA upstream 902569 6187474 ~ 6189926 (-) True LOC113527891
TU244662 lncRNA upstream 918407 6203312 ~ 6204196 (-) True G206628
XM_026916072.2 mRNA downstream 193707 5081588 ~ 5087023 (-) True baxa
XM_026916112.2 mRNA downstream 240869 5015567 ~ 5039861 (-) False gpatch8
XM_026916724.2 mRNA upstream 372932 5657837 ~ 5691272 (-) True mpp3a
XM_026916725.2 mRNA upstream 372932 5657837 ~ 5691272 (-) False mpp3a
XM_034309903.1 mRNA upstream 413182 5698087 ~ 5730023 (-) False si:ch211-198m17.1
XM_026916299.2 mRNA upstream 414110 5699015 ~ 5730022 (-) False si:ch211-198m17.1
XM_026916298.2 mRNA upstream 414110 5699015 ~ 5730022 (-) True si:ch211-198m17.1
TU243535 other downstream 188808 5089336 ~ 5091922 (-) False G205633
XR_004579368.1 other downstream 545844 4722417 ~ 4734886 (-) False mlx
TU243400 other downstream 545925 4728094 ~ 4734805 (-) False mlx
XR_004579349.1 other downstream 1163087 4092913 ~ 4117643 (-) False dcaf7
TU243007 other downstream 1236155 4040481 ~ 4044575 (-) True G205173
TU244177 other upstream 469862 5754767 ~ 5756733 (-) True G206236
TU244224 other upstream 556232 5841137 ~ 5841477 (-) True G206282
XR_004579400.1 other upstream 655957 5940862 ~ 5950997 (-) False retsat
XR_004579347.1 other upstream 668828 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other upstream 668828 5953733 ~ 5961050 (-) True LOC113528542

Expression Profile