Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003402940.2 |
| length | 400 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 2 |
| gene id | LOC113528421 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 14643716 ~ 14644243 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko03013 | Nucleocytoplasmic transport |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU250097 | lncRNA | upstream | 22309 | 14619229 ~ 14621407 (+) | False | socs3a |
| TU250078 | lncRNA | upstream | 80695 | 14562520 ~ 14563021 (+) | True | G211101 |
| TU250048 | lncRNA | upstream | 161700 | 14481813 ~ 14482016 (+) | True | G211076 |
| TU250028 | lncRNA | upstream | 177042 | 14466438 ~ 14466674 (+) | True | G211058 |
| TU249994 | lncRNA | upstream | 209661 | 14433827 ~ 14434055 (+) | True | G211032 |
| TU250211 | lncRNA | downstream | 70428 | 14714671 ~ 14714875 (+) | True | G211208 |
| TU250263 | lncRNA | downstream | 194047 | 14838290 ~ 14843289 (+) | False | LOC113527943 |
| XR_003402895.2 | lncRNA | downstream | 197009 | 14841252 ~ 14844372 (+) | True | LOC113527943 |
| TU250262 | lncRNA | downstream | 197209 | 14841452 ~ 14843289 (+) | False | LOC113527943 |
| TU250264 | lncRNA | downstream | 200179 | 14844422 ~ 14844562 (+) | True | G211247 |
| XM_026916947.2 | mRNA | upstream | 21928 | 14619204 ~ 14621788 (+) | True | socs3a |
| XM_026917131.2 | mRNA | upstream | 42709 | 14534573 ~ 14601007 (+) | False | cyth1a |
| XM_026917129.2 | mRNA | upstream | 42709 | 14544412 ~ 14601007 (+) | True | cyth1a |
| XM_026917130.2 | mRNA | upstream | 42709 | 14558312 ~ 14601007 (+) | False | cyth1a |
| XM_026917132.2 | mRNA | upstream | 42709 | 14570677 ~ 14601007 (+) | False | cyth1a |
| XM_026917065.2 | mRNA | downstream | 234723 | 14878966 ~ 14899732 (+) | True | hid1a |
| XM_026917066.2 | mRNA | downstream | 234723 | 14878966 ~ 14899732 (+) | False | hid1a |
| XM_026916009.2 | mRNA | downstream | 267946 | 14912189 ~ 14920677 (+) | True | ush1ga |
| XM_026916008.2 | mRNA | downstream | 267946 | 14912189 ~ 14919361 (+) | False | ush1ga |
| XM_026917124.2 | mRNA | downstream | 283310 | 14927553 ~ 14932006 (+) | True | LOC113528525 |
| XR_004579399.1 | other | upstream | 1150866 | 13475828 ~ 13492850 (+) | False | zgc:158403 |
| XR_003402925.2 | other | upstream | 2455127 | 12158706 ~ 12188589 (+) | False | arhgap17b |
| XR_004579334.1 | other | upstream | 3065893 | 11567119 ~ 11577823 (+) | False | luc7l3 |
| XR_003402977.1 | other | upstream | 3106551 | 11537047 ~ 11537165 (+) | True | LOC113528662 |
| TU247339 | other | upstream | 4225835 | 10412984 ~ 10417881 (+) | True | G208781 |
| trnar-ucu_8 | other | downstream | 1168999 | 15813242 ~ 15813331 (+) | True | trnar-ucu_8 |
| TU251011 | other | downstream | 1273974 | 15918217 ~ 15968759 (+) | True | G211913 |
| TU251142 | other | downstream | 1496087 | 16140330 ~ 16145384 (+) | False | LOC113527983 |
| TU251743 | other | downstream | 2443048 | 17087291 ~ 17109275 (+) | False | srl |
| XR_004579361.1 | other | downstream | 3539776 | 18184019 ~ 18341937 (+) | True | LOC113528485 |
