Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003402949.2 |
| length | 534 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 2 |
| gene id | LOC113528476 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 5952798 ~ 5953504 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU244141 | lncRNA | downstream | 225118 | 5721634 ~ 5727680 (-) | True | G206210 |
| TU244080 | lncRNA | downstream | 320879 | 5631715 ~ 5631919 (-) | True | G206164 |
| XR_003402932.2 | lncRNA | downstream | 667893 | 5280730 ~ 5284905 (-) | True | LOC113528378 |
| TU243534 | lncRNA | downstream | 860876 | 5089336 ~ 5091922 (-) | False | G205633 |
| XR_003402891.2 | lncRNA | upstream | 233970 | 6187474 ~ 6189926 (-) | True | LOC113527891 |
| TU244662 | lncRNA | upstream | 249808 | 6203312 ~ 6204196 (-) | True | G206628 |
| TU244696 | lncRNA | upstream | 320312 | 6273816 ~ 6346363 (-) | True | G206649 |
| TU244981 | lncRNA | upstream | 692593 | 6646097 ~ 6647814 (-) | False | stat5a |
| TU245006 | lncRNA | upstream | 871392 | 6824896 ~ 6825760 (-) | True | G206924 |
| XM_026916772.2 | mRNA | downstream | 1801 | 5940866 ~ 5950997 (-) | True | retsat |
| XM_026916974.2 | mRNA | downstream | 14367 | 5934040 ~ 5938431 (-) | True | cdk21 |
| XM_034309809.1 | mRNA | downstream | 14384 | 5934040 ~ 5938414 (-) | False | cdk21 |
| XM_034309880.1 | mRNA | downstream | 20922 | 5897560 ~ 5931876 (-) | False | svilc |
| XM_026916322.2 | mRNA | downstream | 21580 | 5897560 ~ 5931218 (-) | False | svilc |
| XM_026917153.2 | mRNA | upstream | 2242 | 5955746 ~ 5961050 (-) | False | LOC113528542 |
| XM_026917240.2 | mRNA | upstream | 9184 | 5962688 ~ 5978373 (-) | True | nmt1a |
| XM_026916955.2 | mRNA | upstream | 27696 | 5981200 ~ 6017987 (-) | True | plcd3a |
| XM_026917015.2 | mRNA | upstream | 72775 | 6026279 ~ 6105884 (-) | False | arhgap23a |
| XM_026917014.2 | mRNA | upstream | 72775 | 6026279 ~ 6091130 (-) | False | arhgap23a |
| XR_004579400.1 | other | downstream | 1801 | 5940862 ~ 5950997 (-) | False | retsat |
| TU244224 | other | downstream | 111321 | 5841137 ~ 5841477 (-) | True | G206282 |
| TU244177 | other | downstream | 196065 | 5754767 ~ 5756733 (-) | True | G206236 |
| TU243535 | other | downstream | 860876 | 5089336 ~ 5091922 (-) | False | G205633 |
| XR_004579368.1 | other | downstream | 1217912 | 4722417 ~ 4734886 (-) | False | mlx |
| XR_004579347.1 | other | upstream | 229 | 5953733 ~ 5961050 (-) | False | LOC113528542 |
| XR_004579346.1 | other | upstream | 229 | 5953733 ~ 5961050 (-) | True | LOC113528542 |
| TU244626 | other | upstream | 173406 | 6126910 ~ 6194996 (-) | True | G206604 |
| trnac-gca_16 | other | upstream | 1317402 | 7270906 ~ 7270977 (-) | True | trnac-gca_16 |
| trnac-gca_17 | other | upstream | 1318751 | 7272255 ~ 7272326 (-) | True | trnac-gca_17 |
