RNA id: XR_003402954.2


Basic Information

Item Value
RNA id XR_003402954.2
length 279
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC113528544
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16647361 ~ 16649303 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAAGAGAACCAAAACACAGGACTggacagcacactggagcttcaCCTTGCATTTATGTTTTGTCCATCCCTGCTGatacaataataatgttaataaaagCTGCTAAAGGCTTAGGGCCAGCCAGGCAACATAGCAGTTCACCAGGGTCCTTATCATCGACACATGCTATTTGTtcgataccagtgatcctgaccccttctgctctccagaactgcctgatccatcctgatgccctacttctggttggagttctcatctctTGAaaaccactcactgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251286 lncRNA upstream 30683 16576423 ~ 16616678 (+) True G212172
XR_004579398.1 lncRNA upstream 33915 16612197 ~ 16613446 (+) True LOC117598846
TU251289 lncRNA upstream 34016 16612253 ~ 16613345 (+) False LOC117598846
TU251291 lncRNA upstream 63030 16578414 ~ 16584331 (+) True G212174
TU251138 lncRNA upstream 493111 16153616 ~ 16154250 (+) True G212030
TU251333 lncRNA downstream 21356 16670659 ~ 16688548 (+) True G212210
TU251321 lncRNA downstream 27160 16676463 ~ 16695790 (+) True G212201
TU251344 lncRNA downstream 41698 16691001 ~ 16693399 (+) True G212219
TU251395 lncRNA downstream 111849 16761152 ~ 16765092 (+) True G212258
TU251394 lncRNA downstream 111911 16761214 ~ 16765092 (+) False G212258
XM_026916132.2 mRNA upstream 97447 16545642 ~ 16549914 (+) False LOC113527936
XM_026916115.2 mRNA downstream 130473 16779776 ~ 16808650 (+) True cfap70
XM_026916118.2 mRNA downstream 130473 16779776 ~ 16808650 (+) False cfap70
XM_026916116.2 mRNA downstream 130473 16779776 ~ 16808650 (+) False cfap70
XM_034310078.1 mRNA downstream 130473 16779776 ~ 16808650 (+) False cfap70
XM_034309870.1 mRNA downstream 159572 16808875 ~ 16819268 (+) False hmox2b
TU251142 other upstream 501977 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 678602 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 834030 15813242 ~ 15813331 (+) True trnar-ucu_8
XR_004579399.1 other upstream 3154511 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 4458772 12158706 ~ 12188589 (+) False arhgap17b
TU251743 other downstream 437988 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 1534716 18184019 ~ 18341937 (+) True LOC113528485
TU252614 other downstream 2265423 18914726 ~ 18919872 (+) True smim22
TU252615 other downstream 2265423 18914726 ~ 18919872 (+) False smim22
TU252829 other downstream 2494771 19144074 ~ 19145240 (+) True G213491

Expression Profile