RNA id: XR_003402963.1


Basic Information

Item Value
RNA id XR_003402963.1
length 119
RNA type rRNA
GC content 0.59
exon number 1
gene id LOC113528647
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11536560 ~ 11536678 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTACGGCCATACCACCCTGAGAACGCCCGATCTCGTCCGATCTCGGAAGCTAAGCAGggtcgggcctggttagtacttggatgggagaccgcctgggaataccaggtgctgtaagct

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0051180 vitamin transport biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:0009611 response to wounding biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0050817 coagulation biological_process
GO:0042060 wound healing biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248206 lncRNA downstream 863 11531576 ~ 11535697 (-) True G209553
TU248194 lncRNA downstream 59764 11403078 ~ 11476796 (-) False G209541
TU248193 lncRNA downstream 130785 11403078 ~ 11405775 (-) True G209541
TU248190 lncRNA downstream 135137 11400722 ~ 11401423 (-) True G209538
TU248181 lncRNA downstream 147329 11388960 ~ 11389231 (-) True G209529
TU248288 lncRNA upstream 63794 11600472 ~ 11601244 (-) True G209618
TU248294 lncRNA upstream 73956 11610634 ~ 11617188 (-) True G209624
XR_003402897.2 lncRNA upstream 82862 11619540 ~ 11626068 (-) True LOC113527962
TU248298 lncRNA upstream 82968 11619646 ~ 11625813 (-) False LOC113527962
TU248307 lncRNA upstream 105490 11642168 ~ 11647997 (-) True hmox1a
XM_026917058.2 mRNA downstream 7118 11520766 ~ 11529442 (-) True slc16a5b
XM_026916933.2 mRNA downstream 18473 11509731 ~ 11518087 (-) True LOC113528402
XM_026916453.2 mRNA downstream 41073 11493275 ~ 11495487 (-) True LOC113528102
XM_026916043.2 mRNA downstream 98225 11426285 ~ 11438335 (-) True hs3st3b1a
XM_026917208.2 mRNA downstream 345045 11154915 ~ 11191515 (-) True ttyh2l
XM_026916692.2 mRNA upstream 105479 11642157 ~ 11645770 (-) False hmox1a
XM_026916973.2 mRNA upstream 163171 11699849 ~ 11701172 (-) True zgc:162612
XM_026916218.2 mRNA upstream 208813 11745491 ~ 11751424 (-) False spc24
XM_026916219.2 mRNA upstream 208813 11745491 ~ 11751402 (-) False spc24
XM_034309686.1 mRNA upstream 208813 11745491 ~ 11751375 (-) True spc24
XR_003402978.2 other downstream 103932 11432510 ~ 11432628 (-) True LOC113528663
XR_003402902.2 other downstream 1066042 10451496 ~ 10470518 (-) False tecpr1b
trnac-gca_22 other downstream 1151440 10385049 ~ 10385120 (-) True trnac-gca_22
XR_004579397.1 other downstream 1805310 9730842 ~ 9731250 (-) False hoxb8a
XR_004579423.1 other downstream 2062082 9466480 ~ 9474478 (-) False copz2
XR_003402973.1 other upstream 29332 11566010 ~ 11566128 (-) True LOC113528658
TU248329 other upstream 163228 11699906 ~ 11701101 (-) False zgc:162612
XR_003402968.1 other upstream 219147 11755825 ~ 11755923 (-) True LOC113528652
XR_003402971.1 other upstream 488824 12025502 ~ 12025572 (-) True LOC113528656
TU248755 other upstream 763327 12300005 ~ 12315469 (-) False LOC113528332

Expression Profile