RNA id: XR_003402972.1


Basic Information

Item Value
RNA id XR_003402972.1
length 93
RNA type ncRNA
GC content 0.52
exon number 1
gene id LOC113528657
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3156617 ~ 3156709 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGTGTGGTGATGAGAACATGGATCAAGCGTCAGGAATGGCGCCCGAAAGGCATGAGGAAATTTTCCATGCTGCCTTCCTTCTGACAGCGCA

Function

GO:

id name namespace
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0070888 E-box binding molecular_function

KEGG:

id description
ko04640 Hematopoietic cell lineage

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242266 lncRNA downstream 80929 3073977 ~ 3075688 (-) False si:dkey-283b1.7
TU242256 lncRNA downstream 116965 3034246 ~ 3039652 (-) True si:dkey-283b1.6
TU242241 lncRNA downstream 123389 3028815 ~ 3033228 (-) True G204524
TU242232 lncRNA downstream 185748 2965883 ~ 2970869 (-) True G204518
TU241989 lncRNA downstream 615092 2541126 ~ 2541525 (-) True G204317
TU242401 lncRNA upstream 14553 3171262 ~ 3174277 (-) True G204664
TU242842 lncRNA upstream 444293 3601002 ~ 3602239 (-) True G205038
TU242834 lncRNA upstream 460462 3617171 ~ 3620119 (-) True G205030
TU242844 lncRNA upstream 473985 3630694 ~ 3631383 (-) True G205040
TU242874 lncRNA upstream 547574 3704283 ~ 3738959 (-) True G205063
XM_034310182.1 mRNA downstream 78599 3075532 ~ 3078018 (-) False si:dkey-283b1.7
XM_026916303.2 mRNA downstream 78607 3074264 ~ 3078010 (-) True si:dkey-283b1.7
XM_026916306.2 mRNA downstream 83790 3066745 ~ 3072827 (-) True rpl23
XM_026917006.2 mRNA downstream 92806 3059168 ~ 3063811 (-) True ccdc103
XM_026916632.2 mRNA downstream 97661 3057417 ~ 3058956 (-) True LOC113528219
XM_026917079.2 mRNA upstream 26276 3182985 ~ 3191017 (-) True rusf1
XM_026917078.2 mRNA upstream 26276 3182985 ~ 3190970 (-) False rusf1
XM_034309806.1 mRNA upstream 43438 3200147 ~ 3213935 (-) False prr14
XM_026916799.2 mRNA upstream 43438 3200147 ~ 3213935 (-) True prr14
XM_026916075.2 mRNA upstream 57777 3214486 ~ 3218927 (-) True cd2bp2
XR_003402970.1 other downstream 1187 3155296 ~ 3155430 (-) True LOC113528655
XR_004579338.1 other downstream 556265 2599709 ~ 2600352 (-) True LOC117598767
XR_004579451.1 other downstream 1148829 2003534 ~ 2007788 (-) False LOC113527889
XR_004579450.1 other downstream 1148830 2003534 ~ 2007787 (-) False LOC113527889
XR_003402974.1 other downstream 1657012 1499515 ~ 1499605 (-) True LOC113528659
XR_004579380.1 other upstream 226122 3382831 ~ 3413767 (-) False nde1
XR_004579378.1 other upstream 243036 3399745 ~ 3413767 (-) False nde1
XR_004579379.1 other upstream 243036 3399745 ~ 3413767 (-) False nde1
TU243007 other upstream 883772 4040481 ~ 4044575 (-) True G205173
XR_004579349.1 other upstream 936204 4092913 ~ 4117643 (-) False dcaf7

Expression Profile