RNA id: XR_004579336.1


Basic Information

Item Value
RNA id XR_004579336.1
length 342
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id LOC117598763
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 551404 ~ 566798 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacgaagttCACAGCTGTGTTCTCATGTCACTGTTTGATAATTTTCACAAAAAAGAGAACTTCCTCCGTGTGAAATATGGCTCTGTAGCTCGTAGCTTCTTCCCTGATCGAGGTCACTGGTGATGTGTTTCATTTTGATGGTCTGGTTTTGGTCGTTGTTCTGAGTCTCACTGAAGTCTGGTCCAGTACTGACCCAAGCTCGGGTCCTGATCTCCAGCCTGAACCCCGACCGGCCCTGAGAGCGACACGCTGGGAAGAAGACTCCAGCCCAGGAAGAAGAATCCAGTTCAGGAACAATAAAGATACATGTGACTCTCAGAGTCTCAGCGAgcaaatttatgg

Function

GO: NA

KEGG:

id description
ko00780 Biotin metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240717 lncRNA downstream 1693 549463 ~ 549711 (-) True G203271
TU240714 lncRNA downstream 17821 533292 ~ 533583 (-) True G203268
TU240706 lncRNA downstream 45492 505316 ~ 505912 (-) True G203261
TU240674 lncRNA downstream 61673 486309 ~ 489731 (-) False G203254
TU240677 lncRNA downstream 61673 486309 ~ 489731 (-) True G203254
TU240908 lncRNA upstream 98740 665538 ~ 669489 (-) True G203425
TU240973 lncRNA upstream 126701 693499 ~ 693886 (-) True G203471
TU240956 lncRNA upstream 153291 720089 ~ 763924 (-) True G203458
TU240954 lncRNA upstream 162013 728811 ~ 738745 (-) True G203456
TU240988 lncRNA upstream 171071 737869 ~ 745841 (-) True G203486
XM_026911421.2 mRNA downstream 34454 512361 ~ 516950 (-) True rcn3
XM_034309748.1 mRNA downstream 34796 512361 ~ 516608 (-) False rcn3
XM_034309749.1 mRNA downstream 35600 507370 ~ 515804 (-) False rcn3
XM_034310146.1 mRNA downstream 134829 405926 ~ 416575 (-) True si:ch211-195b15.7
XM_034309956.1 mRNA downstream 258792 288206 ~ 292612 (-) False prmt1
XM_034310149.1 mRNA upstream 44392 611190 ~ 614186 (-) True LOC113525013
XM_026911406.2 mRNA upstream 55547 622345 ~ 630711 (-) True tspan4b
XM_034309740.1 mRNA upstream 68886 635684 ~ 639207 (-) True si:ch73-248e21.7
XM_034309729.1 mRNA upstream 75711 642509 ~ 644586 (-) False si:ch73-248e21.5
XM_034309730.1 mRNA upstream 75711 642509 ~ 644586 (-) False si:ch73-248e21.5
TU240668 other downstream 61673 486222 ~ 489731 (-) False G203254
TU240540 other downstream 217760 331541 ~ 333644 (-) True G203154
TU240560 other downstream 388820 162126 ~ 162584 (-) True G203170
TU240322 other downstream 497129 37599 ~ 54275 (-) False aldh16a1
TU240992 other upstream 174446 741244 ~ 750799 (-) True G203488
TU240994 other upstream 174599 741397 ~ 743393 (-) False LOC117598978
TU240991 other upstream 175895 742693 ~ 749361 (-) False G203488
TU241063 other upstream 343319 910117 ~ 911228 (-) True G203544
TU241084 other upstream 477939 1044737 ~ 1046555 (-) False si:dkey-66i24.7

Expression Profile