Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579341.1 |
| length | 218 |
| lncRNA type | inter_gene |
| GC content | 0.43 |
| exon number | 3 |
| gene id | LOC117598770 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 19784413 ~ 19792659 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU253255 | lncRNA | upstream | 68854 | 19698004 ~ 19715559 (+) | True | G213864 |
| TU253224 | lncRNA | upstream | 77563 | 19664704 ~ 19706850 (+) | True | G213834 |
| TU253176 | lncRNA | upstream | 153102 | 19630891 ~ 19631311 (+) | True | G213792 |
| TU253054 | lncRNA | upstream | 313057 | 19469862 ~ 19471356 (+) | True | G213678 |
| TU253047 | lncRNA | upstream | 329379 | 19378888 ~ 19455034 (+) | False | LOC113528521 |
| TU253382 | lncRNA | downstream | 80417 | 19873076 ~ 19911732 (+) | False | LOC113528458 |
| TU253387 | lncRNA | downstream | 119480 | 19912139 ~ 19912375 (+) | True | G213984 |
| TU253415 | lncRNA | downstream | 175349 | 19968008 ~ 19970156 (+) | True | G214012 |
| TU253526 | lncRNA | downstream | 279036 | 20071695 ~ 20181878 (+) | False | G214098 |
| TU253520 | lncRNA | downstream | 348756 | 20141415 ~ 20144597 (+) | True | G214098 |
| XM_026917162.2 | mRNA | upstream | 15539 | 19743995 ~ 19768874 (+) | True | nsfa |
| XM_034309661.1 | mRNA | upstream | 362020 | 19378853 ~ 19422393 (+) | True | LOC113528521 |
| XM_026917118.2 | mRNA | upstream | 362020 | 19378853 ~ 19422393 (+) | False | LOC113528521 |
| XM_034309662.1 | mRNA | upstream | 362020 | 19378853 ~ 19422393 (+) | False | LOC113528521 |
| XM_026916188.2 | mRNA | upstream | 422249 | 19355856 ~ 19362164 (+) | True | ndufab1b |
| XM_026916943.2 | mRNA | downstream | 16304 | 19808963 ~ 19810891 (+) | True | msx1a |
| XM_026917158.2 | mRNA | downstream | 33991 | 19826650 ~ 19842682 (+) | True | LOC113528548 |
| XM_034309786.1 | mRNA | downstream | 33991 | 19826650 ~ 19842682 (+) | False | LOC113528548 |
| XM_026915985.2 | mRNA | downstream | 67747 | 19860406 ~ 19885555 (+) | True | LOC113527852 |
| XM_034310318.1 | mRNA | downstream | 67747 | 19860406 ~ 19885555 (+) | False | LOC113527852 |
| XR_004579333.1 | other | upstream | 471195 | 19301355 ~ 19313218 (+) | True | gng13b |
| TU252829 | other | upstream | 639173 | 19144074 ~ 19145240 (+) | True | G213491 |
| TU252614 | other | upstream | 864541 | 18914726 ~ 18919872 (+) | True | smim22 |
| TU252615 | other | upstream | 864541 | 18914726 ~ 18919872 (+) | False | smim22 |
| XR_004579361.1 | other | upstream | 1442476 | 18184019 ~ 18341937 (+) | True | LOC113528485 |
| TU253379 | other | downstream | 113543 | 19906202 ~ 19910165 (+) | False | LOC113528458 |
| XR_004579366.1 | other | downstream | 141165 | 19933824 ~ 19953286 (+) | False | LOC113528304 |
| TU253418 | other | downstream | 185655 | 19978314 ~ 19981380 (+) | True | G214015 |
| XR_004579430.1 | other | downstream | 229850 | 20022509 ~ 20076408 (+) | False | LOC113528520 |
| TU254301 | other | downstream | 1547757 | 21340416 ~ 21349086 (+) | True | hopx |
