Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579348.1 |
| length | 618 |
| lncRNA type | inter_gene |
| GC content | 0.48 |
| exon number | 3 |
| gene id | LOC117598773 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 17276654 ~ 17285842 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko03450 | Non-homologous end-joining |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU251769 | lncRNA | upstream | 96401 | 17179794 ~ 17180253 (+) | True | G212571 |
| TU251750 | lncRNA | upstream | 163498 | 17110236 ~ 17113156 (+) | False | srl |
| TU251703 | lncRNA | upstream | 220847 | 17052378 ~ 17055807 (+) | True | G212541 |
| TU251602 | lncRNA | upstream | 348672 | 16869758 ~ 16927982 (+) | True | G212446 |
| TU251605 | lncRNA | upstream | 349285 | 16923805 ~ 16927369 (+) | True | G212449 |
| TU251790 | lncRNA | downstream | 10566 | 17296408 ~ 17296874 (+) | True | G212589 |
| TU251893 | lncRNA | downstream | 99122 | 17384964 ~ 17385177 (+) | True | G212662 |
| TU251986 | lncRNA | downstream | 376113 | 17661955 ~ 17662194 (+) | True | G212728 |
| TU251987 | lncRNA | downstream | 377893 | 17663735 ~ 17663960 (+) | True | G212729 |
| TU251980 | lncRNA | downstream | 406249 | 17692091 ~ 17694083 (+) | True | G212722 |
| XM_026917225.2 | mRNA | upstream | 163884 | 17087284 ~ 17112770 (+) | True | srl |
| XM_026917226.2 | mRNA | upstream | 163884 | 17087285 ~ 17112770 (+) | False | srl |
| XM_026917074.2 | mRNA | upstream | 190899 | 17067237 ~ 17085755 (+) | True | tfap4 |
| XM_034309796.1 | mRNA | upstream | 277960 | 16997366 ~ 16998694 (+) | True | LOC117595691 |
| XM_034310192.1 | mRNA | upstream | 279002 | 16995855 ~ 16997652 (+) | True | LOC113528633 |
| XM_026916268.2 | mRNA | downstream | 33900 | 17319742 ~ 17342075 (+) | True | trap1 |
| XM_026916309.2 | mRNA | downstream | 412831 | 17698673 ~ 17733006 (+) | False | cenpx |
| XM_026916308.2 | mRNA | downstream | 412831 | 17698673 ~ 17730565 (+) | True | cenpx |
| XM_026916307.2 | mRNA | downstream | 412831 | 17698673 ~ 17722261 (+) | False | cenpx |
| XM_026916310.2 | mRNA | downstream | 412831 | 17698673 ~ 17702742 (+) | False | cenpx |
| TU251743 | other | upstream | 167379 | 17087291 ~ 17109275 (+) | False | srl |
| TU251142 | other | upstream | 1131270 | 16140330 ~ 16145384 (+) | False | LOC113527983 |
| TU251011 | other | upstream | 1307895 | 15918217 ~ 15968759 (+) | True | G211913 |
| trnar-ucu_8 | other | upstream | 1463323 | 15813242 ~ 15813331 (+) | True | trnar-ucu_8 |
| XR_004579399.1 | other | upstream | 3783804 | 13475828 ~ 13492850 (+) | False | zgc:158403 |
| XR_004579361.1 | other | downstream | 898177 | 18184019 ~ 18341937 (+) | True | LOC113528485 |
| TU252614 | other | downstream | 1628884 | 18914726 ~ 18919872 (+) | True | smim22 |
| TU252615 | other | downstream | 1628884 | 18914726 ~ 18919872 (+) | False | smim22 |
| TU252829 | other | downstream | 1858232 | 19144074 ~ 19145240 (+) | True | G213491 |
| XR_004579333.1 | other | downstream | 2015513 | 19301355 ~ 19313218 (+) | True | gng13b |
