Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579353.1 |
| length | 432 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 5 |
| gene id | LOC117598822 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 21496429 ~ 21497974 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004579356.1 | lncRNA | downstream | 811 | 21492275 ~ 21495618 (-) | False | LOC113540570 |
| TU254492 | lncRNA | downstream | 812 | 21435594 ~ 21495617 (-) | False | G214949 |
| XR_004579355.1 | lncRNA | downstream | 2979 | 21492275 ~ 21493450 (-) | False | LOC113540570 |
| TU254484 | lncRNA | downstream | 3932 | 21485240 ~ 21492497 (-) | True | LOC113540570 |
| TU254489 | lncRNA | downstream | 28098 | 21419768 ~ 21468331 (-) | True | G214947 |
| XR_004579358.1 | lncRNA | upstream | 2576 | 21500550 ~ 21504305 (-) | True | LOC117598825 |
| TU254496 | lncRNA | upstream | 17953 | 21515927 ~ 21556656 (-) | False | LOC117598823 |
| TU254506 | lncRNA | upstream | 18886 | 21516860 ~ 21558172 (-) | True | G214958 |
| TU254507 | lncRNA | upstream | 18886 | 21516860 ~ 21517608 (-) | False | G214958 |
| TU254499 | lncRNA | upstream | 21119 | 21519093 ~ 21556656 (-) | False | LOC117598823 |
| XM_034309841.1 | mRNA | downstream | 116213 | 21368754 ~ 21380216 (-) | True | srp72 |
| XM_026916545.2 | mRNA | downstream | 129317 | 21360562 ~ 21367112 (-) | True | arl9 |
| XM_026916544.2 | mRNA | downstream | 129320 | 21360562 ~ 21367109 (-) | False | arl9 |
| XM_026916242.2 | mRNA | downstream | 137239 | 21352281 ~ 21359190 (-) | True | LOC113528016 |
| XM_026936343.2 | mRNA | upstream | 88124 | 21586098 ~ 21613875 (-) | False | b4galt1l |
| XM_026936342.2 | mRNA | upstream | 88124 | 21586098 ~ 21613875 (-) | True | b4galt1l |
| XM_034309813.1 | mRNA | upstream | 828752 | 22326726 ~ 22345779 (-) | True | LOC117598814 |
| XM_034310140.1 | mRNA | upstream | 901711 | 22399685 ~ 22419910 (-) | False | LOC117598969 |
| XM_034309681.1 | mRNA | upstream | 1054750 | 22552724 ~ 22582102 (-) | True | topaz1 |
| TU254170 | other | downstream | 469170 | 21014439 ~ 21027259 (-) | True | fgf2 |
| trnal-aag_9 | other | downstream | 1083499 | 20412849 ~ 20412930 (-) | True | trnal-aag_9 |
| TU253598 | other | downstream | 1432939 | 20040423 ~ 20063490 (-) | False | slc2a9l2 |
| TU253095 | other | downstream | 2048095 | 19444989 ~ 19448334 (-) | False | rbbp6 |
| trnat-cgu_6 | other | downstream | 2420089 | 19076269 ~ 19076340 (-) | True | trnat-cgu_6 |
| LOC113546932 | other | upstream | 174188 | 21672162 ~ 21683433 (-) | True | LOC113546932 |
| LOC117598919 | other | upstream | 174848 | 21672822 ~ 21673330 (-) | True | LOC117598919 |
| LOC117598868 | other | upstream | 177664 | 21675638 ~ 21676807 (-) | True | LOC117598868 |
| TU254923 | other | upstream | 178297 | 21676271 ~ 22215359 (-) | False | G215187 |
| LOC117598954 | other | upstream | 186050 | 21684024 ~ 21684645 (-) | True | LOC117598954 |
