RNA id: XR_004579359.1


Basic Information

Item Value
RNA id XR_004579359.1
length 409
lncRNA type intronic
GC content 0.41
exon number 2
gene id LOC117598826
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21414462 ~ 21416513 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCACTCACGACCAACATCTTTAGCAAGTACAGAGAGAGGACTGTTCTCTGGATAAAATGAGAATACAGGTCATCTTTGGAATCCtgtggattttcacacaagctGCCATGGGTTTGCTGTTTCAGGATCCTGTTGTCTGTAGATTTACTGAGAGTAATCAGTGTTATGTAGTTCTGGGACAACGACTGCACCTGCCAATGCCCCTGGAGGAAAAGTTAGAGCTAAAGATCACAGACAAGACATCTACCCCTCGTTTAATTATAAGATATAGAAAAACCCAAAGTAACCCACCAAAACCAAATCCCCCAAGATGGCAGTTtgttaatgataataaaactaTGATACTAACCAGTGCAGAGAGGAACGACTCTGGAACATACACTTTAGTCACCTTTGATGCAAAAGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254313 lncRNA upstream 46234 21368024 ~ 21368228 (+) True G214798
XR_004579331.1 lncRNA upstream 55403 21356850 ~ 21359059 (+) True LOC117598756
XR_004579332.1 lncRNA upstream 55403 21356850 ~ 21359059 (+) False LOC117598756
TU254255 lncRNA upstream 169677 21198542 ~ 21244785 (+) True G214753
TU254231 lncRNA upstream 228159 21185266 ~ 21186303 (+) True G214731
TU254318 lncRNA downstream 10461 21426974 ~ 21448404 (+) True G214802
TU254320 lncRNA downstream 31480 21447993 ~ 21466726 (+) True G214804
TU254324 lncRNA downstream 58120 21474633 ~ 21474963 (+) True G214807
XR_004579360.1 lncRNA downstream 85624 21502137 ~ 21505786 (+) True LOC117598827
TU254327 lncRNA downstream 96058 21512571 ~ 21513040 (+) False LOC113540568
XM_034309846.1 mRNA upstream 982 21405340 ~ 21413480 (+) True LOC117598821
XM_026915990.2 mRNA upstream 11738 21390903 ~ 21402724 (+) True LOC113527856
XM_034309845.1 mRNA upstream 11738 21390903 ~ 21402724 (+) False LOC113527856
XM_034309848.1 mRNA upstream 27375 21381780 ~ 21387087 (+) True LOC113527892
XM_034309849.1 mRNA upstream 27375 21381780 ~ 21387087 (+) False LOC113527892
XM_034309840.1 mRNA downstream 37605 21454118 ~ 21480442 (+) True LOC117598820
XM_034309811.1 mRNA downstream 65509 21482022 ~ 21513034 (+) True LOC113540568
XM_034309843.1 mRNA downstream 98060 21514573 ~ 21563801 (+) False LOC113540569
XM_034309844.1 mRNA downstream 98060 21514573 ~ 21563801 (+) False LOC113540569
XM_034309842.1 mRNA downstream 98060 21514573 ~ 21521999 (+) False LOC113540569
TU254301 other upstream 65376 21340416 ~ 21349086 (+) True hopx
TU254300 other upstream 65633 21341247 ~ 21348829 (+) False hopx
TU254302 other upstream 65633 21341247 ~ 21348829 (+) False hopx
TU254303 other upstream 65633 21341247 ~ 21348829 (+) False hopx
TU254299 other upstream 65633 21341566 ~ 21348829 (+) False hopx
LOC117598747 other downstream 229339 21645852 ~ 21646623 (+) True LOC117598747
TU254580 other downstream 229567 21646080 ~ 21649152 (+) True G215015
LOC117598748 other downstream 230723 21647236 ~ 21647803 (+) True LOC117598748
LOC117598992 other downstream 241989 21658502 ~ 21659107 (+) True LOC117598992
LOC117599000 other downstream 243912 21660425 ~ 21661039 (+) True LOC117599000

Expression Profile