RNA id: XR_004579360.1


Basic Information

Item Value
RNA id XR_004579360.1
length 362
lncRNA type intronic
GC content 0.41
exon number 2
gene id LOC117598827
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21502137 ~ 21505786 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagaaactaCAACTTCAGCATCAACTACTGCACAGTTTAGTAATGGCAAAGTTCCTGCTGATGGTTTGCTGTTTGAGGATCCTGTTGTCTGTAGATTTACTGAGAGTAATCAGTGTTATGTAGCTCTGGGACAACGACTGCACCTGCCAATGCCCATGGAGGTTGGGTTAGACCTAAAGATCACAGACAAGACATCTACCTCtcgtttaattttaaaatatagaaaaaccCAAAGTAACCCACCAAAACCAAATCCCCCAAGATGGCAGTTtgttaatgataataaaactaTGATACTAACCAGTGCAGAGAGGAACGACTCTGGAACATACACTTTAGACACCTTTGATGCAAACGGGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254324 lncRNA upstream 27174 21474633 ~ 21474963 (+) True G214807
TU254320 lncRNA upstream 35411 21447993 ~ 21466726 (+) True G214804
TU254315 lncRNA upstream 37508 21406373 ~ 21464629 (+) True G214800
TU254318 lncRNA upstream 53733 21426974 ~ 21448404 (+) True G214802
XR_004579359.1 lncRNA upstream 85624 21414462 ~ 21416513 (+) True LOC117598826
TU254327 lncRNA downstream 6785 21512571 ~ 21513040 (+) False LOC113540568
TU254249 lncRNA downstream 45763 21551549 ~ 21556401 (+) True G214747
TU254247 lncRNA downstream 52204 21557990 ~ 21565376 (+) True LOC113540569
TU254342 lncRNA downstream 111309 21617095 ~ 21617294 (+) True G214825
TU254346 lncRNA downstream 129065 21634851 ~ 21635074 (+) True G214829
XM_034309840.1 mRNA upstream 21695 21454118 ~ 21480442 (+) True LOC117598820
XM_034309847.1 mRNA upstream 71679 21405340 ~ 21430458 (+) False LOC117598821
XM_034309846.1 mRNA upstream 88657 21405340 ~ 21413480 (+) True LOC117598821
XM_026915990.2 mRNA upstream 99413 21390903 ~ 21402724 (+) True LOC113527856
XM_034309845.1 mRNA upstream 99413 21390903 ~ 21402724 (+) False LOC113527856
XM_034309843.1 mRNA downstream 8787 21514573 ~ 21563801 (+) False LOC113540569
XM_034309844.1 mRNA downstream 8787 21514573 ~ 21563801 (+) False LOC113540569
XM_034309842.1 mRNA downstream 8787 21514573 ~ 21521999 (+) False LOC113540569
XM_026937154.2 mRNA downstream 36204 21541990 ~ 21546092 (+) True LOC113540583
XM_034309850.1 mRNA downstream 36204 21541990 ~ 21546092 (+) False LOC113540583
TU254301 other upstream 153051 21340416 ~ 21349086 (+) True hopx
TU254300 other upstream 153308 21341247 ~ 21348829 (+) False hopx
TU254302 other upstream 153308 21341247 ~ 21348829 (+) False hopx
TU254303 other upstream 153308 21341247 ~ 21348829 (+) False hopx
TU254299 other upstream 153308 21341566 ~ 21348829 (+) False hopx
LOC117598747 other downstream 140066 21645852 ~ 21646623 (+) True LOC117598747
TU254580 other downstream 140294 21646080 ~ 21649152 (+) True G215015
LOC117598748 other downstream 141450 21647236 ~ 21647803 (+) True LOC117598748
LOC117598992 other downstream 152716 21658502 ~ 21659107 (+) True LOC117598992
LOC117599000 other downstream 154639 21660425 ~ 21661039 (+) True LOC117599000

Expression Profile