RNA id: XR_004579362.1


Basic Information

Item Value
RNA id XR_004579362.1
length 496
lncRNA type inter_gene
GC content 0.53
exon number 3
gene id LOC117598828
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11845573 ~ 11879417 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagagacgttgctAAAGTTCGGTGCTGTGCCTCGAGATGCCCGCGATGTTGGAAAAGTGTACGACggagatttcagggaaaagaagaggcagaaactcGATGAACAACCCgacaaaaagttttacttcCAACGGCAACAGTAACAGTTGTTGGTCAGTGATGAGGAGCAGGTTCTCTGTGTTGCTGAAGAGCACTCTCTGGTCGGTTCGGGCGAGCTTAGCAGGCGGCTCCAGAGACTCCTCGCCAAGAGCGGCTCCGTCAGCAGGCAGAGCCAATTCCTGACACTCATCAtcactctcctcttcctcctcatcctcctcttctgacaaacacacacaaaggaatGGTTACAATCACAGACGTGACAGAGAAGAAGCTgCGAGGGAGCTGAAGGATGGCTGACCTGTAGAAGCTCCATCTGAGCAGAAAGAGTTTAGCAGCTTTGGGGAAGGCCGGGCTGGCCTGGTAGGGCTTTAGGACCTGGGAGACGACAC

Function

GO:

id name namespace
GO:1900052 regulation of retinoic acid biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248316 lncRNA downstream 180444 11664485 ~ 11665129 (-) True G209646
TU248307 lncRNA downstream 197576 11642168 ~ 11647997 (-) True hmox1a
XR_003402897.2 lncRNA downstream 219505 11619540 ~ 11626068 (-) True LOC113527962
TU248298 lncRNA downstream 219760 11619646 ~ 11625813 (-) False LOC113527962
TU248294 lncRNA downstream 228385 11610634 ~ 11617188 (-) True G209624
TU248548 lncRNA upstream 188837 12068254 ~ 12068622 (-) True G209829
TU248549 lncRNA upstream 189396 12068813 ~ 12069180 (-) True G209830
TU248551 lncRNA upstream 190879 12070296 ~ 12070602 (-) True G209832
TU248558 lncRNA upstream 197255 12076672 ~ 12077073 (-) True G209839
TU248554 lncRNA upstream 204319 12083736 ~ 12084702 (-) True G209835
XM_026917039.2 mRNA downstream 17466 11826285 ~ 11828107 (-) True rln3a
XM_026916884.2 mRNA downstream 19794 11810207 ~ 11825779 (-) False il12rb2l
XM_026916883.2 mRNA downstream 19794 11810207 ~ 11825779 (-) True il12rb2l
XM_026916879.2 mRNA downstream 36557 11790575 ~ 11809016 (-) True smarca4a
XM_026916878.2 mRNA downstream 36557 11791354 ~ 11809016 (-) False smarca4a
XM_026916024.2 mRNA upstream 84278 11963695 ~ 12012792 (-) False tmem104
XM_026916020.2 mRNA upstream 84278 11963695 ~ 12012790 (-) True tmem104
XM_026916022.2 mRNA upstream 84704 11964121 ~ 12012976 (-) False tmem104
XM_026916021.2 mRNA upstream 84704 11964121 ~ 12012791 (-) False tmem104
XM_026916695.2 mRNA upstream 135784 12015201 ~ 12032758 (-) False tnpo2
XR_003402968.1 other downstream 89650 11755825 ~ 11755923 (-) True LOC113528652
TU248329 other downstream 144472 11699906 ~ 11701101 (-) False zgc:162612
XR_003402973.1 other downstream 279445 11566010 ~ 11566128 (-) True LOC113528658
XR_003402963.1 other downstream 308895 11536560 ~ 11536678 (-) True LOC113528647
XR_003402978.2 other downstream 412945 11432510 ~ 11432628 (-) True LOC113528663
XR_003402971.1 other upstream 146085 12025502 ~ 12025572 (-) True LOC113528656
TU248755 other upstream 420588 12300005 ~ 12315469 (-) False LOC113528332
TU248759 other upstream 454441 12333858 ~ 12339269 (-) True msrb1a
XR_004579428.1 other upstream 669412 12548829 ~ 12559213 (-) False tom1
XR_004579425.1 other upstream 669412 12548829 ~ 12559213 (-) False tom1

Expression Profile