Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579371.1 |
| length | 427 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 2 |
| gene id | LOC117598833 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 3990406 ~ 3990917 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU242970 | lncRNA | downstream | 32696 | 3948849 ~ 3957710 (-) | False | G205145 |
| TU242972 | lncRNA | downstream | 32696 | 3948849 ~ 3957710 (-) | True | G205145 |
| TU242974 | lncRNA | downstream | 32696 | 3948849 ~ 3957710 (-) | False | G205145 |
| TU242898 | lncRNA | downstream | 213956 | 3768855 ~ 3776450 (-) | False | kcnc3a |
| TU242900 | lncRNA | downstream | 213956 | 3768855 ~ 3776450 (-) | False | kcnc3a |
| TU243002 | lncRNA | upstream | 42979 | 4033896 ~ 4035077 (-) | True | G205169 |
| TU242998 | lncRNA | upstream | 111439 | 4102356 ~ 4104225 (-) | True | G205165 |
| TU242986 | lncRNA | upstream | 138224 | 4129141 ~ 4131967 (-) | True | G205155 |
| TU243049 | lncRNA | upstream | 215183 | 4206100 ~ 4206299 (-) | True | G205211 |
| TU243055 | lncRNA | upstream | 219518 | 4210435 ~ 4210598 (-) | True | G205217 |
| XM_034310036.1 | mRNA | downstream | 57586 | 3917672 ~ 3932820 (-) | False | strada |
| XM_026916870.2 | mRNA | downstream | 57586 | 3917672 ~ 3932820 (-) | False | strada |
| XM_026916868.2 | mRNA | downstream | 57586 | 3917672 ~ 3932820 (-) | True | strada |
| XM_034310037.1 | mRNA | downstream | 57593 | 3917672 ~ 3932813 (-) | False | strada |
| XM_034310039.1 | mRNA | downstream | 82979 | 3904787 ~ 3907427 (-) | True | pex11a |
| XM_034309824.1 | mRNA | upstream | 118916 | 4109833 ~ 4117643 (-) | True | dcaf7 |
| XM_034310221.1 | mRNA | upstream | 161142 | 4152059 ~ 4192591 (-) | False | mylk5 |
| XM_034310219.1 | mRNA | upstream | 161142 | 4152059 ~ 4191953 (-) | False | mylk5 |
| XM_026916960.2 | mRNA | upstream | 161142 | 4152059 ~ 4191952 (-) | True | mylk5 |
| XM_034310220.1 | mRNA | upstream | 161142 | 4152059 ~ 4189551 (-) | False | mylk5 |
| XR_004579380.1 | other | downstream | 576639 | 3382831 ~ 3413767 (-) | False | nde1 |
| XR_004579378.1 | other | downstream | 576639 | 3399745 ~ 3413767 (-) | False | nde1 |
| XR_004579379.1 | other | downstream | 576639 | 3399745 ~ 3413767 (-) | False | nde1 |
| XR_003402972.1 | other | downstream | 833697 | 3156617 ~ 3156709 (-) | True | LOC113528657 |
| XR_003402970.1 | other | downstream | 834976 | 3155296 ~ 3155430 (-) | True | LOC113528655 |
| TU243007 | other | upstream | 49564 | 4040481 ~ 4044575 (-) | True | G205173 |
| XR_004579349.1 | other | upstream | 101996 | 4092913 ~ 4117643 (-) | False | dcaf7 |
| XR_004579368.1 | other | upstream | 731500 | 4722417 ~ 4734886 (-) | False | mlx |
| TU243400 | other | upstream | 737177 | 4728094 ~ 4734805 (-) | False | mlx |
| TU243535 | other | upstream | 1098419 | 5089336 ~ 5091922 (-) | False | G205633 |
