Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579405.1 |
| length | 655 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 2 |
| gene id | LOC117598970 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 21912612 ~ 21913349 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004579408.1 | lncRNA | upstream | 23812 | 21888031 ~ 21888800 (+) | True | LOC117598973 |
| TU254636 | lncRNA | upstream | 105269 | 21774223 ~ 21807343 (+) | True | G215064 |
| TU254625 | lncRNA | upstream | 194536 | 21717692 ~ 21718076 (+) | True | G215055 |
| TU254607 | lncRNA | upstream | 255777 | 21656261 ~ 21656835 (+) | True | G215042 |
| TU254346 | lncRNA | upstream | 277538 | 21634851 ~ 21635074 (+) | True | G214829 |
| TU254643 | lncRNA | downstream | 3070 | 21916419 ~ 21995065 (+) | True | G215069 |
| TU254658 | lncRNA | downstream | 10629 | 21923978 ~ 21935017 (+) | False | G215075 |
| TU254659 | lncRNA | downstream | 10629 | 21923978 ~ 21966233 (+) | True | G215075 |
| TU254600 | lncRNA | downstream | 102469 | 22015818 ~ 22020735 (+) | True | G215035 |
| TU254686 | lncRNA | downstream | 144995 | 22058344 ~ 22059756 (+) | True | G215093 |
| XM_034309812.1 | mRNA | upstream | 280706 | 21620631 ~ 21631906 (+) | True | rest |
| XM_034309844.1 | mRNA | upstream | 348811 | 21514573 ~ 21563801 (+) | False | LOC113540569 |
| XM_034309814.1 | mRNA | downstream | 549805 | 22463154 ~ 22490911 (+) | True | LOC113546930 |
| XM_034309815.1 | mRNA | downstream | 624153 | 22537502 ~ 22548866 (+) | True | LOC113546929 |
| XM_026947097.2 | mRNA | downstream | 701510 | 22614859 ~ 22621980 (+) | True | cckb |
| XM_034310060.1 | mRNA | downstream | 820386 | 22733735 ~ 22754432 (+) | False | rnf44 |
| XM_034310059.1 | mRNA | downstream | 827591 | 22740940 ~ 22754432 (+) | True | rnf44 |
| LOC117598790 | other | upstream | 793 | 21911288 ~ 21911819 (+) | True | LOC117598790 |
| LOC117598935 | other | upstream | 2516 | 21909653 ~ 21910096 (+) | True | LOC117598935 |
| LOC117598962 | other | upstream | 13273 | 21898908 ~ 21899339 (+) | True | LOC117598962 |
| LOC117598900 | other | upstream | 18451 | 21893169 ~ 21894161 (+) | True | LOC117598900 |
| LOC117598789 | other | upstream | 20481 | 21891598 ~ 21892131 (+) | True | LOC117598789 |
| TU254596 | other | downstream | 6575 | 21919924 ~ 21977381 (+) | False | LOC117598791 |
| LOC117598791 | other | downstream | 6591 | 21919940 ~ 21922741 (+) | True | LOC117598791 |
| LOC117598968 | other | downstream | 63611 | 21976960 ~ 21979634 (+) | True | LOC117598968 |
| LOC117598891 | other | downstream | 67604 | 21980953 ~ 21981799 (+) | False | LOC117598891 |
| TU254667 | other | downstream | 67605 | 21980954 ~ 21981815 (+) | True | LOC117598891 |
